Variant report

Variant	rs2267664
Chromosome Location	chr6:35312254-35312255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35308697..35314051-chr6:35417510..35421585,8	K562	blood:
2	chr6:35308405..35313609-chr6:35434054..35440248,12	K562	blood:
3	chr6:35308378..35313609-chr6:35433550..35439145,12	K562	blood:
4	chr6:35310404..35313411-chr6:35381684..35386621,4	MCF-7	breast:
5	chr6:35311203..35312769-chr6:35313218..35316156,2	K562	blood:
6	chr6:35223638..35227228-chr6:35311300..35313480,3	K562	blood:
7	chr6:35310112..35312932-chr6:35464368..35466518,2	K562	blood:
8	chr6:35309118..35313462-chr6:35418133..35422102,7	MCF-7	breast:
9	chr6:35311343..35313343-chr6:35379052..35381672,2	MCF-7	breast:
10	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
11	chr6:35310869..35315599-chr6:35463091..35467750,4	K562	blood:
12	chr6:35309852..35312289-chr6:35417832..35421264,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112039	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10080361	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1013907	0.85[ASN][1000 genomes]
rs10755687	0.82[JPT][hapmap]
rs10807150	0.82[JPT][hapmap]
rs10947540	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1194	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12173347	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12173582	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12211765	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12211943	0.86[ASN][1000 genomes]
rs13214290	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1557567	0.82[JPT][hapmap]
rs1557568	0.82[JPT][hapmap]
rs1888822	0.90[JPT][hapmap]
rs1888823	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1888824	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1888825	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1894650	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1894651	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1894652	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1894653	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1929847	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1929849	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1987673	0.82[JPT][hapmap]
rs2006184	0.82[ASN][1000 genomes]
rs2032538	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2071920	0.82[JPT][hapmap]
rs2183834	0.91[ASN][1000 genomes]
rs2267657	0.82[JPT][hapmap]
rs2267658	0.85[ASN][1000 genomes]
rs2267660	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2267661	0.95[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2267662	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2267663	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2284195	0.86[ASN][1000 genomes]
rs2395614	0.82[JPT][hapmap]
rs2395621	0.87[ASN][1000 genomes]
rs3777744	0.82[JPT][hapmap]
rs3798342	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3798343	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs3800382	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800383	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800385	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3800386	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800387	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800388	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800392	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3800400	1.00[EUR][1000 genomes]
rs4583983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711409	0.85[ASN][1000 genomes]
rs4711411	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4711413	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711414	0.87[ASN][1000 genomes]
rs4713845	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4713848	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4713850	0.86[ASN][1000 genomes]
rs58925593	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62403575	0.87[ASN][1000 genomes]
rs6457812	0.82[JPT][hapmap]
rs6902523	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6907324	0.87[ASN][1000 genomes]
rs6907573	0.91[ASN][1000 genomes]
rs6913037	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6913475	0.83[ASN][1000 genomes]
rs6920432	0.82[ASN][1000 genomes]
rs6920747	0.87[ASN][1000 genomes]
rs6928769	0.84[ASN][1000 genomes]
rs6930562	0.82[ASN][1000 genomes]
rs6938946	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs72909061	0.84[ASN][1000 genomes]
rs7757316	0.84[ASN][1000 genomes]
rs7763946	0.84[ASN][1000 genomes]
rs7769906	0.86[ASN][1000 genomes]
rs7772212	0.87[ASN][1000 genomes]
rs7772302	0.81[ASN][1000 genomes]
rs8205	0.80[JPT][hapmap]
rs914547	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9296144	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9296150	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9348974	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9366882	0.82[JPT][hapmap]
rs9366883	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9366885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368852	1.00[EUR][1000 genomes]
rs9368853	1.00[EUR][1000 genomes]
rs9368854	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368857	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368860	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368865	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9380500	1.00[JPT][hapmap]
rs9380501	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9380502	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380505	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9380507	0.89[EUR][1000 genomes]
rs9394283	0.84[ASN][1000 genomes]
rs9394288	1.00[JPT][hapmap]
rs9394289	0.86[ASN][1000 genomes]
rs9462065	0.82[JPT][hapmap]
rs9462072	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469964	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9469972	0.82[JPT][hapmap]
rs9469979	0.85[ASN][1000 genomes]
rs9469982	0.82[JPT][hapmap]
rs9469997	0.86[ASN][1000 genomes]
rs9469998	0.84[ASN][1000 genomes]
rs965272	0.81[JPT][hapmap]
rs975496	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs991145	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35309800-35312800	Active TSS	GM12878-XiMat	blood
2	chr6:35310600-35312600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:35310800-35312400	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr6:35310800-35312400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr6:35310800-35312600	Flanking Active TSS	Right Ventricle	heart
6	chr6:35311000-35312600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:35311000-35312600	Flanking Active TSS	Brain Substantia Nigra	brain
8	chr6:35311000-35312800	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr6:35311200-35312400	Flanking Active TSS	HMEC	breast
10	chr6:35311200-35313200	Enhancers	Spleen	Spleen
11	chr6:35311400-35312400	Weak transcription	Small Intestine	intestine
12	chr6:35311400-35314200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:35311400-35314400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:35311400-35314600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:35311400-35316200	Weak transcription	Pancreas	Pancrea
16	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:35311600-35312400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:35311600-35312600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr6:35311600-35312600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr6:35311600-35312600	Enhancers	Thymus	Thymus
23	chr6:35311600-35312800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:35311600-35312800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:35311600-35312800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:35311600-35312800	Enhancers	Fetal Brain Male	brain
27	chr6:35311600-35314600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:35311600-35316000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:35311600-35316200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:35311600-35327600	Weak transcription	A549	lung
34	chr6:35311800-35312400	Enhancers	Aorta	Aorta
35	chr6:35311800-35312400	Enhancers	Fetal Muscle Leg	muscle
36	chr6:35311800-35312400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr6:35311800-35312600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:35311800-35312600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:35311800-35312600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:35311800-35312600	Enhancers	Brain Germinal Matrix	brain
41	chr6:35311800-35312600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:35311800-35312600	Enhancers	Fetal Stomach	stomach
43	chr6:35311800-35312600	Enhancers	Left Ventricle	heart
44	chr6:35311800-35312600	Enhancers	Ovary	ovary
45	chr6:35311800-35312600	Enhancers	K562	blood
46	chr6:35311800-35312600	Flanking Active TSS	Osteobl	bone
47	chr6:35311800-35312800	Enhancers	Brain Angular Gyrus	brain
48	chr6:35311800-35312800	Enhancers	Esophagus	oesophagus
49	chr6:35311800-35312800	Enhancers	Gastric	stomach
50	chr6:35311800-35313000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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