Variant report

Variant	rs9368865
Chromosome Location	chr6:35363736-35363737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35360599..35362739-chr6:35363627..35365707,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12173347	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12173582	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12211765	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1894652	0.89[EUR][1000 genomes]
rs1894653	0.89[EUR][1000 genomes]
rs2267660	0.89[EUR][1000 genomes]
rs2267661	0.89[EUR][1000 genomes]
rs2267664	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798342	0.89[EUR][1000 genomes]
rs3798343	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800382	0.89[EUR][1000 genomes]
rs3800383	0.89[EUR][1000 genomes]
rs3800386	0.89[EUR][1000 genomes]
rs3800387	0.89[EUR][1000 genomes]
rs3800388	0.89[EUR][1000 genomes]
rs3800400	0.89[EUR][1000 genomes]
rs4583983	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4711413	0.89[EUR][1000 genomes]
rs4713848	0.89[EUR][1000 genomes]
rs58925593	0.89[EUR][1000 genomes]
rs9296150	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9348974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366885	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368852	0.89[EUR][1000 genomes]
rs9368853	0.89[EUR][1000 genomes]
rs9368854	0.89[EUR][1000 genomes]
rs9368857	0.89[EUR][1000 genomes]
rs9368859	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368860	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380502	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380507	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462072	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
3	chr6:35354000-35372400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:35355000-35364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:35359600-35369200	Weak transcription	Fetal Kidney	kidney
6	chr6:35359800-35364600	Weak transcription	NHDF-Ad	bronchial
7	chr6:35359800-35378800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:35360000-35364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:35360000-35366400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:35360000-35378200	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:35360000-35378400	Weak transcription	HSMMtube	muscle
12	chr6:35360000-35379000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:35360000-35382600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:35360400-35372000	Weak transcription	Brain Angular Gyrus	brain
15	chr6:35360400-35372200	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:35360600-35365200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:35360600-35372400	Weak transcription	Brain Anterior Caudate	brain
18	chr6:35360600-35378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:35360800-35364600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:35360800-35367800	Weak transcription	Liver	Liver
21	chr6:35361000-35364200	Weak transcription	Fetal Intestine Small	intestine
22	chr6:35361000-35365000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:35361000-35365000	Weak transcription	Fetal Stomach	stomach
24	chr6:35361000-35365000	Weak transcription	Right Atrium	heart
25	chr6:35361000-35365400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:35361000-35378000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:35361000-35378600	Weak transcription	Adipose Nuclei	Adipose
28	chr6:35361000-35378600	Weak transcription	NHLF	lung
29	chr6:35361000-35378800	Weak transcription	Psoas Muscle	Psoas
30	chr6:35361200-35364800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:35361200-35364800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:35361200-35364800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:35361200-35376200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:35361200-35378600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:35361400-35364800	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:35361400-35367800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:35361600-35365600	Weak transcription	Colonic Mucosa	Colon
38	chr6:35361800-35365000	Weak transcription	Gastric	stomach
39	chr6:35361800-35367800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:35361800-35385800	Weak transcription	Small Intestine	intestine
41	chr6:35362000-35363800	Transcr. at gene 5' and 3'	NHEK	skin
42	chr6:35362000-35368800	Weak transcription	Right Ventricle	heart
43	chr6:35362000-35378000	Weak transcription	Spleen	Spleen
44	chr6:35362200-35364600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:35362200-35364600	Weak transcription	NH-A	brain
46	chr6:35362200-35364600	Weak transcription	Osteobl	bone
47	chr6:35362200-35364800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:35362200-35365000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:35362200-35367800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:35362200-35368600	Weak transcription	Lung	lung

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