Variant report

Variant	rs9368859
Chromosome Location	chr6:35315632-35315633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
2	chr6:35314045..35316677-chr6:35329976..35332837,2	K562	blood:
3	chr6:35310212..35313058-chr6:35313527..35317832,4	MCF-7	breast:
4	chr6:35313773..35316682-chr6:35327162..35330055,2	MCF-7	breast:
5	chr6:35311203..35312769-chr6:35313218..35316156,2	K562	blood:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10080361	0.82[ASN][1000 genomes]
rs1013907	0.85[ASN][1000 genomes]
rs10947540	0.83[ASN][1000 genomes]
rs1194	0.84[ASN][1000 genomes]
rs12173347	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12173582	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211765	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12211943	0.83[ASN][1000 genomes]
rs13214290	0.84[ASN][1000 genomes]
rs1888823	0.84[ASN][1000 genomes]
rs1888824	0.83[ASN][1000 genomes]
rs1888825	0.83[ASN][1000 genomes]
rs1894650	0.83[ASN][1000 genomes]
rs1894651	0.82[ASN][1000 genomes]
rs1894652	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1894653	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1929847	0.84[ASN][1000 genomes]
rs1929849	0.84[ASN][1000 genomes]
rs2183834	0.88[ASN][1000 genomes]
rs2267658	0.82[ASN][1000 genomes]
rs2267660	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2267661	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2267662	0.84[ASN][1000 genomes]
rs2267663	0.83[ASN][1000 genomes]
rs2267664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2284195	0.83[ASN][1000 genomes]
rs2395621	0.84[ASN][1000 genomes]
rs3798342	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3798343	0.90[ASN][1000 genomes]
rs3800382	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800383	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800385	0.84[ASN][1000 genomes]
rs3800386	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800387	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800388	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800392	0.84[ASN][1000 genomes]
rs3800400	1.00[EUR][1000 genomes]
rs4583983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711409	0.85[ASN][1000 genomes]
rs4711411	0.83[ASN][1000 genomes]
rs4711413	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4711414	0.84[ASN][1000 genomes]
rs4713845	0.83[ASN][1000 genomes]
rs4713848	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713850	0.83[ASN][1000 genomes]
rs58925593	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62403575	0.84[ASN][1000 genomes]
rs6902523	0.84[ASN][1000 genomes]
rs6907324	0.84[ASN][1000 genomes]
rs6907573	0.88[ASN][1000 genomes]
rs6913037	0.83[ASN][1000 genomes]
rs6913475	0.80[ASN][1000 genomes]
rs6920747	0.84[ASN][1000 genomes]
rs6928769	0.84[ASN][1000 genomes]
rs6938946	0.86[ASN][1000 genomes]
rs72909061	0.84[ASN][1000 genomes]
rs7757316	0.81[ASN][1000 genomes]
rs7763946	0.84[ASN][1000 genomes]
rs7769906	0.83[ASN][1000 genomes]
rs7772212	0.84[ASN][1000 genomes]
rs914547	0.83[ASN][1000 genomes]
rs9296144	0.83[ASN][1000 genomes]
rs9296150	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9348974	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9366883	0.83[ASN][1000 genomes]
rs9366885	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9368852	1.00[EUR][1000 genomes]
rs9368853	1.00[EUR][1000 genomes]
rs9368854	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368857	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368865	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380501	0.84[ASN][1000 genomes]
rs9380502	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380505	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380507	0.89[EUR][1000 genomes]
rs9394283	0.84[ASN][1000 genomes]
rs9394289	0.83[ASN][1000 genomes]
rs9462072	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469964	0.84[ASN][1000 genomes]
rs9469979	0.82[ASN][1000 genomes]
rs9469997	0.83[ASN][1000 genomes]
rs9469998	0.81[ASN][1000 genomes]
rs975496	0.84[ASN][1000 genomes]
rs991145	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35316200	Weak transcription	Pancreas	Pancrea
2	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:35311600-35316000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:35311600-35316200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:35311600-35327600	Weak transcription	A549	lung
11	chr6:35311800-35316600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:35311800-35318400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
15	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
16	chr6:35312000-35315800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:35312000-35318400	Genic enhancers	Primary B cells from peripheral blood	blood
18	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
19	chr6:35312200-35316200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:35312200-35318200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
22	chr6:35312400-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:35312600-35315800	Strong transcription	Fetal Intestine Large	intestine
24	chr6:35312600-35316000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:35312600-35316800	Strong transcription	NHEK	skin
26	chr6:35312600-35317600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
28	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
29	chr6:35312800-35315800	Weak transcription	Fetal Thymus	thymus
30	chr6:35312800-35316000	Weak transcription	Right Ventricle	heart
31	chr6:35312800-35316200	Weak transcription	Gastric	stomach
32	chr6:35312800-35318000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
34	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
35	chr6:35313000-35316000	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:35313000-35317400	Strong transcription	NH-A	brain
37	chr6:35313000-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:35313000-35317800	Strong transcription	Left Ventricle	heart
39	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
40	chr6:35313200-35316200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:35313200-35316400	Strong transcription	Rectal Smooth Muscle	rectum
42	chr6:35313200-35317400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:35313200-35317400	Strong transcription	Thymus	Thymus
44	chr6:35313200-35317600	Strong transcription	NHLF	lung
45	chr6:35313200-35318000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:35313200-35318200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:35313200-35320400	Weak transcription	Fetal Kidney	kidney
48	chr6:35313400-35317400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:35313400-35317400	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr6:35313400-35317400	Strong transcription	Stomach Smooth Muscle	stomach

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