Variant report

Variant	rs9462072
Chromosome Location	chr6:35301201-35301202
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35298845..35301666-chr6:35464357..35466762,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10080361	0.83[ASN][1000 genomes]
rs1013907	0.83[ASN][1000 genomes]
rs10947540	0.84[ASN][1000 genomes]
rs1194	0.84[ASN][1000 genomes]
rs12173347	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12173582	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12211765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12211943	0.84[ASN][1000 genomes]
rs13214290	0.82[ASN][1000 genomes]
rs1888823	0.84[ASN][1000 genomes]
rs1888824	0.84[ASN][1000 genomes]
rs1888825	0.84[ASN][1000 genomes]
rs1894650	0.84[ASN][1000 genomes]
rs1894651	0.83[ASN][1000 genomes]
rs1894652	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1894653	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1929847	0.84[ASN][1000 genomes]
rs1929849	0.82[ASN][1000 genomes]
rs2006184	0.81[ASN][1000 genomes]
rs2183834	0.88[ASN][1000 genomes]
rs2267658	0.83[ASN][1000 genomes]
rs2267660	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2267661	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2267662	0.84[ASN][1000 genomes]
rs2267663	0.84[ASN][1000 genomes]
rs2267664	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2284195	0.84[ASN][1000 genomes]
rs2395621	0.85[ASN][1000 genomes]
rs3798342	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798343	0.89[ASN][1000 genomes]
rs3800382	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800383	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3800385	0.82[ASN][1000 genomes]
rs3800386	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800387	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800388	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800392	0.81[ASN][1000 genomes]
rs3800400	1.00[EUR][1000 genomes]
rs4583983	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4711409	0.83[ASN][1000 genomes]
rs4711411	0.84[ASN][1000 genomes]
rs4711413	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4711414	0.84[ASN][1000 genomes]
rs4713845	0.84[ASN][1000 genomes]
rs4713848	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713850	0.84[ASN][1000 genomes]
rs58925593	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62403575	0.84[ASN][1000 genomes]
rs6902523	0.84[ASN][1000 genomes]
rs6907324	0.84[ASN][1000 genomes]
rs6907573	0.88[ASN][1000 genomes]
rs6913037	0.84[ASN][1000 genomes]
rs6913475	0.81[ASN][1000 genomes]
rs6920432	0.80[ASN][1000 genomes]
rs6920747	0.84[ASN][1000 genomes]
rs6928769	0.81[ASN][1000 genomes]
rs6930562	0.83[ASN][1000 genomes]
rs6938946	0.87[ASN][1000 genomes]
rs72909061	0.81[ASN][1000 genomes]
rs7757316	0.82[ASN][1000 genomes]
rs7763946	0.82[ASN][1000 genomes]
rs7769906	0.84[ASN][1000 genomes]
rs7772212	0.84[ASN][1000 genomes]
rs7772302	0.82[ASN][1000 genomes]
rs914547	0.81[ASN][1000 genomes]
rs9296144	0.84[ASN][1000 genomes]
rs9296150	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9348974	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9366883	0.84[ASN][1000 genomes]
rs9366885	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368852	1.00[EUR][1000 genomes]
rs9368853	1.00[EUR][1000 genomes]
rs9368854	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9368857	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368859	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9368860	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9368865	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380501	0.84[ASN][1000 genomes]
rs9380502	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380505	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380507	0.89[EUR][1000 genomes]
rs9394283	0.82[ASN][1000 genomes]
rs9394289	0.84[ASN][1000 genomes]
rs9469964	0.82[ASN][1000 genomes]
rs9469979	0.83[ASN][1000 genomes]
rs9469997	0.84[ASN][1000 genomes]
rs9469998	0.82[ASN][1000 genomes]
rs975496	0.84[ASN][1000 genomes]
rs991145	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
2	chr6:35291600-35309600	Weak transcription	Dnd41	blood
3	chr6:35293200-35309600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:35296000-35303000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:35300400-35308800	Weak transcription	Placenta	Placenta
6	chr6:35300600-35302200	Weak transcription	Fetal Thymus	thymus
7	chr6:35300600-35309800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:35300800-35309600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:35300800-35309800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:35301000-35304600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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