Variant report

Variant	rs6902523
Chromosome Location	chr6:35244531-35244532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35237800..35240387-chr6:35244181..35246310,2	K562	blood:
2	chr6:35231872..35233836-chr6:35244161..35246644,2	K562	blood:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10080361	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1013907	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10755687	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10807150	0.83[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs10947540	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10947542	0.84[ASN][1000 genomes]
rs1108709	0.86[ASN][1000 genomes]
rs1194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12173347	0.84[ASN][1000 genomes]
rs12173582	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12211765	0.87[ASN][1000 genomes]
rs12211943	0.81[ASN][1000 genomes]
rs13214290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1557567	0.83[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1557568	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1590381	0.86[ASN][1000 genomes]
rs1888822	0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1888823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1888825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894650	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894651	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894652	0.94[ASN][1000 genomes]
rs1894653	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1929847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1929848	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs1929849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1987673	0.83[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2006184	0.94[ASN][1000 genomes]
rs2018373	0.92[ASN][1000 genomes]
rs2032538	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2071920	0.83[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs2183834	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2267657	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2267658	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2267660	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2267661	0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2267662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2267664	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2284195	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2395614	0.84[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs34156110	0.82[ASN][1000 genomes]
rs3777742	0.87[ASN][1000 genomes]
rs3777743	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3777744	0.82[JPT][hapmap]
rs3798342	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3798343	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs3800382	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3800383	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3800385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800386	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3800387	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3800388	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3800392	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800393	0.85[ASN][1000 genomes]
rs3800396	0.90[ASN][1000 genomes]
rs3800398	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800399	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800401	0.81[ASN][1000 genomes]
rs4583983	0.88[ASN][1000 genomes]
rs4711409	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711413	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4711414	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713841	0.90[ASN][1000 genomes]
rs4713845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713847	0.85[ASN][1000 genomes]
rs4713848	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4713850	0.81[ASN][1000 genomes]
rs58925593	0.95[ASN][1000 genomes]
rs62403575	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457812	0.84[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs68164647	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6906987	0.83[ASN][1000 genomes]
rs6907324	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907364	0.85[ASN][1000 genomes]
rs6907573	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6907795	0.90[ASN][1000 genomes]
rs6913037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6913475	0.84[ASN][1000 genomes]
rs6913941	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916364	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919534	0.81[CEU][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs6920432	0.83[ASN][1000 genomes]
rs6920747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927730	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6928769	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930562	0.86[ASN][1000 genomes]
rs6933979	0.83[CHB][hapmap]
rs6938946	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6941471	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72909061	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757316	0.83[ASN][1000 genomes]
rs7763946	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7769906	0.99[ASN][1000 genomes]
rs7772212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772302	0.82[ASN][1000 genomes]
rs8205	0.88[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs914547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9296144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9296150	0.81[ASN][1000 genomes]
rs9348970	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs9366882	0.84[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs9366883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366885	0.87[ASN][1000 genomes]
rs9368854	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9368857	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9368859	0.84[ASN][1000 genomes]
rs9368860	0.84[ASN][1000 genomes]
rs9380497	0.81[ASN][1000 genomes]
rs9380498	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380500	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs9380501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380502	0.90[ASN][1000 genomes]
rs9394283	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9394289	0.99[ASN][1000 genomes]
rs9462065	0.84[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs9462072	0.84[ASN][1000 genomes]
rs9469953	0.83[CHB][hapmap]
rs9469964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9469972	0.83[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs9469975	0.89[ASN][1000 genomes]
rs9469979	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9469982	0.88[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs9469997	0.81[ASN][1000 genomes]
rs9469998	0.83[ASN][1000 genomes]
rs965272	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs968828	0.86[ASN][1000 genomes]
rs975496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991145	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228400-35247800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:35228400-35248000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35228600-35248400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:35228600-35248800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:35228800-35248800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:35228800-35248800	Weak transcription	Spleen	Spleen
9	chr6:35228800-35249000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:35228800-35249000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:35229000-35248800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:35229000-35248800	Weak transcription	Thymus	Thymus
14	chr6:35229000-35249000	Weak transcription	Liver	Liver
15	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
16	chr6:35229200-35246200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:35229200-35248800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:35229200-35248800	Weak transcription	Dnd41	blood
19	chr6:35229200-35250200	Weak transcription	Pancreas	Pancrea
20	chr6:35231200-35248400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:35232200-35248600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:35232200-35248800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:35232400-35248800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:35232400-35250200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:35232600-35248400	Weak transcription	Fetal Lung	lung
26	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
27	chr6:35232800-35248800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:35232800-35248800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:35232800-35249000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:35233600-35248800	Weak transcription	Primary B cells from cord blood	blood
31	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
32	chr6:35235600-35246400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:35235600-35246400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:35236200-35248800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:35236200-35248800	Weak transcription	GM12878-XiMat	blood
36	chr6:35236400-35249000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:35237600-35248600	Weak transcription	Fetal Thymus	thymus
38	chr6:35237800-35253400	Weak transcription	Gastric	stomach
39	chr6:35237800-35264800	Weak transcription	K562	blood
40	chr6:35239000-35248800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:35239800-35246200	Weak transcription	Primary T cells from cord blood	blood
42	chr6:35240400-35248800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:35240600-35248600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:35242400-35248800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:35242400-35248800	Weak transcription	Fetal Intestine Small	intestine
46	chr6:35242600-35248800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:35243200-35248400	Weak transcription	NHDF-Ad	bronchial
48	chr6:35243200-35250000	Weak transcription	HSMMtube	muscle
49	chr6:35243200-35250200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:35243400-35246200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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