The 2.0 version of rSNPBase

Variant report

Variant rs6930562
Chromosome Location chr6:35291792-35291793
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:35276000-35293800 Weak transcription K562 blood
2 chr6:35280800-35293200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
3 chr6:35282000-35293400 Strong transcription Primary neutrophils fromperipheralblood blood
4 chr6:35282000-35293600 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr6:35282000-35293800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr6:35282200-35293600 Strong transcription Primary monocytes fromperipheralblood blood
7 chr6:35282600-35293600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr6:35282800-35293600 Strong transcription Primary hematopoietic stem cells short term culture blood
9 chr6:35283400-35293400 Strong transcription Primary B cells from cord blood blood
10 chr6:35283800-35293400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
11 chr6:35284000-35293000 Strong transcription Primary T cells from cord blood blood
12 chr6:35284000-35293400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
13 chr6:35284200-35293400 Strong transcription Primary T helper naive cells from peripheral blood blood
14 chr6:35284400-35292800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr6:35284400-35293600 Strong transcription Primary T regulatory cells fromperipheralblood blood
16 chr6:35285200-35292800 Strong transcription Thymus Thymus
17 chr6:35285400-35293400 Strong transcription Primary T helper cells PMA-I stimulated --
18 chr6:35285800-35293000 Strong transcription Primary T killer naive cells fromperipheralblood blood
19 chr6:35286000-35293600 Strong transcription Fetal Thymus thymus
20 chr6:35286600-35310000 Weak transcription Right Atrium heart
21 chr6:35286800-35292200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr6:35286800-35292600 Weak transcription Colonic Mucosa Colon
23 chr6:35286800-35293400 Strong transcription Primary T helper cells fromperipheralblood blood
24 chr6:35286800-35294800 Weak transcription Fetal Muscle Leg muscle
25 chr6:35286800-35295000 Weak transcription H9 Cell Line embryonic stem cell
26 chr6:35286800-35295000 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr6:35286800-35295200 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr6:35286800-35295200 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr6:35286800-35299800 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr6:35286800-35299800 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr6:35287200-35293200 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr6:35287200-35293400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr6:35287600-35295000 Weak transcription HepG2 liver
34 chr6:35287800-35293400 Weak transcription Gastric stomach
35 chr6:35287800-35295200 Weak transcription Fetal Intestine Large intestine
36 chr6:35287800-35295200 Weak transcription Pancreas Pancrea
37 chr6:35289400-35294200 Weak transcription HMEC breast
38 chr6:35289400-35295200 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr6:35289600-35292800 Weak transcription Fetal Stomach stomach
40 chr6:35289600-35292800 Weak transcription Lung lung
41 chr6:35289600-35293400 Strong transcription Primary T cells fromperipheralblood blood
42 chr6:35289600-35295200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr6:35289600-35299800 Weak transcription Esophagus oesophagus
44 chr6:35290000-35293400 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr6:35290200-35299800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr6:35290400-35293200 Strong transcription Primary T helper naive cells fromperipheralblood blood
47 chr6:35290400-35295200 Weak transcription Primary hematopoietic stem cells blood
48 chr6:35290400-35296600 Weak transcription NHEK skin
49 chr6:35290400-35299400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr6:35290600-35292600 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015