Variant report

Variant	rs7772212
Chromosome Location	chr6:35249908-35249909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35213830..35215728-chr6:35248385..35249951,2	K562	blood:
2	chr6:35249084..35250623-chr6:35257544..35259252,2	K562	blood:
3	chr6:35249001..35251643-chr6:35253439..35256338,3	MCF-7	breast:
4	chr6:35248636..35252801-chr6:35252914..35256314,5	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10080361	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1013907	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10755687	0.85[ASN][1000 genomes]
rs10807150	0.90[ASN][1000 genomes]
rs10947540	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10947542	0.84[ASN][1000 genomes]
rs1108709	0.86[ASN][1000 genomes]
rs1194	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12173347	0.84[ASN][1000 genomes]
rs12173582	0.81[ASN][1000 genomes]
rs12211765	0.87[ASN][1000 genomes]
rs12211943	0.81[ASN][1000 genomes]
rs13214290	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1557567	0.90[ASN][1000 genomes]
rs1557568	0.90[ASN][1000 genomes]
rs1590381	0.86[ASN][1000 genomes]
rs1888822	0.86[ASN][1000 genomes]
rs1888823	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888824	0.99[ASN][1000 genomes]
rs1888825	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894650	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894651	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894652	0.94[ASN][1000 genomes]
rs1894653	0.94[ASN][1000 genomes]
rs1929847	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1929849	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1987673	0.86[ASN][1000 genomes]
rs2006184	0.94[ASN][1000 genomes]
rs2018373	0.92[ASN][1000 genomes]
rs2071920	0.90[ASN][1000 genomes]
rs2183834	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2267657	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2267658	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2267660	0.95[ASN][1000 genomes]
rs2267661	0.95[ASN][1000 genomes]
rs2267662	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267663	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2267664	0.87[ASN][1000 genomes]
rs2284195	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2395614	0.88[ASN][1000 genomes]
rs34156110	0.82[ASN][1000 genomes]
rs3777742	0.87[ASN][1000 genomes]
rs3777743	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3798342	0.95[ASN][1000 genomes]
rs3798343	0.80[ASN][1000 genomes]
rs3800382	0.95[ASN][1000 genomes]
rs3800383	0.94[ASN][1000 genomes]
rs3800385	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800386	0.92[ASN][1000 genomes]
rs3800387	0.92[ASN][1000 genomes]
rs3800388	0.92[ASN][1000 genomes]
rs3800392	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800393	0.85[ASN][1000 genomes]
rs3800396	0.90[ASN][1000 genomes]
rs3800398	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800399	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800401	0.81[ASN][1000 genomes]
rs4583983	0.88[ASN][1000 genomes]
rs4711409	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711411	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711413	0.94[ASN][1000 genomes]
rs4711414	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713841	0.90[ASN][1000 genomes]
rs4713845	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713847	0.85[ASN][1000 genomes]
rs4713848	0.93[ASN][1000 genomes]
rs4713850	0.81[ASN][1000 genomes]
rs58925593	0.95[ASN][1000 genomes]
rs62403575	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457812	0.90[ASN][1000 genomes]
rs68164647	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6902523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906987	0.83[ASN][1000 genomes]
rs6907324	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907364	0.85[ASN][1000 genomes]
rs6907573	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6907795	0.90[ASN][1000 genomes]
rs6913037	0.99[ASN][1000 genomes]
rs6913475	0.84[ASN][1000 genomes]
rs6913941	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916364	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919534	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6920432	0.83[ASN][1000 genomes]
rs6920747	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927730	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6928769	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930562	0.86[ASN][1000 genomes]
rs6938946	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6941471	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72909061	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757316	0.83[ASN][1000 genomes]
rs7763946	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7769906	0.99[ASN][1000 genomes]
rs7772302	0.82[ASN][1000 genomes]
rs8205	0.90[ASN][1000 genomes]
rs914547	0.96[ASN][1000 genomes]
rs9296144	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9296150	0.81[ASN][1000 genomes]
rs9348970	0.80[EUR][1000 genomes]
rs9366882	0.90[ASN][1000 genomes]
rs9366883	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366885	0.87[ASN][1000 genomes]
rs9368854	0.92[ASN][1000 genomes]
rs9368857	0.95[ASN][1000 genomes]
rs9368859	0.84[ASN][1000 genomes]
rs9368860	0.84[ASN][1000 genomes]
rs9380497	0.81[ASN][1000 genomes]
rs9380498	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380501	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380502	0.90[ASN][1000 genomes]
rs9394283	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394289	0.99[ASN][1000 genomes]
rs9462065	0.87[ASN][1000 genomes]
rs9462072	0.84[ASN][1000 genomes]
rs9469964	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9469972	0.90[ASN][1000 genomes]
rs9469975	0.89[ASN][1000 genomes]
rs9469979	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9469982	0.90[ASN][1000 genomes]
rs9469997	0.81[ASN][1000 genomes]
rs9469998	0.83[ASN][1000 genomes]
rs965272	0.90[ASN][1000 genomes]
rs968828	0.86[ASN][1000 genomes]
rs975496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991145	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
5	chr6:35229200-35250200	Weak transcription	Pancreas	Pancrea
6	chr6:35232400-35250200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
8	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
9	chr6:35237800-35253400	Weak transcription	Gastric	stomach
10	chr6:35237800-35264800	Weak transcription	K562	blood
11	chr6:35243200-35250000	Weak transcription	HSMMtube	muscle
12	chr6:35243200-35250200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:35243400-35256800	Weak transcription	NHEK	skin
14	chr6:35243400-35265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:35243600-35250200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:35243600-35250200	Weak transcription	HSMM	muscle
17	chr6:35243600-35250800	Weak transcription	HMEC	breast
18	chr6:35243600-35254000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:35243800-35250200	Weak transcription	Ovary	ovary
20	chr6:35243800-35250200	Weak transcription	Psoas Muscle	Psoas
21	chr6:35243800-35250800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:35244000-35250400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:35244000-35253800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:35244600-35253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:35246800-35254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:35247200-35253000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:35247400-35250400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:35247600-35250600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:35247800-35255400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr6:35247800-35264600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:35248000-35264800	Strong transcription	Stomach Smooth Muscle	stomach
32	chr6:35248200-35253400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:35248400-35251800	Strong transcription	Lung	lung
34	chr6:35248400-35255000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:35248400-35262200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr6:35248400-35263400	Strong transcription	Rectal Smooth Muscle	rectum
37	chr6:35248400-35264400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:35248600-35253800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:35248600-35264200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr6:35248600-35264200	Strong transcription	Fetal Thymus	thymus
41	chr6:35248600-35264400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr6:35248800-35250200	Weak transcription	HUVEC	blood vessel
43	chr6:35248800-35251000	Strong transcription	Fetal Muscle Leg	muscle
44	chr6:35248800-35251400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:35248800-35251400	Strong transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:35248800-35251600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:35248800-35251800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:35248800-35251800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:35248800-35251800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:35248800-35251800	Strong transcription	Colonic Mucosa	Colon

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