Variant report

Variant	rs12211943
Chromosome Location	chr6:35306857-35306858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:35306837-35306887	HPAEpiC	pulmonary alveolar:	n/a
2	chr6:35306837-35306887	CMK	blood:	n/a
3	chr6:35306837-35306887	T-47D	breast:	n/a
4	chr6:35306837-35306887	HIPEpiC	eye:	n/a
5	chr6:35306837-35306887	H1-hESC	embryonic stem cell:	embryo
6	chr6:35306837-35306887	BJ	skin:	n/a
7	chr6:35306837-35306887	HepG2	liver:	n/a
8	chr6:35306837-35306887	HNPCEpiC	eye:	n/a
9	chr6:35306837-35306887	HCF	heart:	n/a
10	chr6:35306837-35306887	SAEC	small airway:	n/a
11	chr6:35306837-35306887	RPTEC	kidney:	n/a
12	chr6:35306837-35306887	SK-N-MC	brain:	n/a
13	chr6:35306837-35306887	BE2_C	brain:	n/a
14	chr6:35306837-35306887	HCM	heart:	n/a
15	chr6:35306837-35306887	Caco-2	colon:	n/a
16	chr6:35306837-35306887	A549	lung:	n/a
17	chr6:35306837-35306887	ECC-1	luminal epithelium:	n/a
18	chr6:35306837-35306887	NT2-D1	testis:	n/a
19	chr6:35306837-35306887	LNCaP	prostate:	n/a
20	chr6:35306837-35306887	AG04450	lung:	fetal
21	chr6:35306837-35306887	Jurkat	blood:	n/a
22	chr6:35306837-35306887	GM19239	blood:	n/a
23	chr6:35306837-35306887	GM12891	blood:	n/a
24	chr6:35306837-35306887	GM06990	blood:	n/a
25	chr6:35306837-35306887	NH-A	brain:	n/a
26	chr6:35306837-35306887	U87	brain:	n/a
27	chr6:35306837-35306887	HCT-116	colon:	n/a
28	chr6:35306837-35306887	HUVEC	blood vessel:	n/a
29	chr6:35306837-35306887	HAEpiC	amniotic membrane:	n/a
30	chr6:35306837-35306887	AG04449	skin:	fetal
31	chr6:35306837-35306887	SKMC	muscle:	n/a
32	chr6:35306837-35306887	PFSK-1	brain:	n/a
33	chr6:35306837-35306887	IMR90	lung:	fetal
34	chr6:35306837-35306887	PrEC	prostate:	n/a
35	chr6:35306837-35306887	Hepatocyte	liver:	n/a
36	chr6:35306837-35306887	ProgFib	skin:	n/a
37	chr6:35306837-35306887	AoSMC	blood vessel:	n/a
38	chr6:35306837-35306887	GM12892	blood:	n/a
39	chr6:35306837-35306887	AG09309	skin:	n/a
40	chr6:35306837-35306887	HEEpiC	esophagus:	n/a
41	chr6:35306837-35306887	MCF10A-Er-Src	breast:	n/a
42	chr6:35306837-35306887	AG10803	skin:	n/a
43	chr6:35306837-35306887	NHBE	bronchial:	n/a
44	chr6:35306837-35306887	MCF-7	breast:	n/a
45	chr6:35306837-35306887	PANC-1	pancreas:	n/a
46	chr6:35306837-35306887	GM12878	blood:	n/a
47	chr6:35306837-35306887	HRCEpiC	kidney:	n/a
48	chr6:35306837-35306887	NB4	blood:	n/a
49	chr6:35306837-35306887	SK-N-SH_RA	brain:	n/a
50	chr6:35306837-35306887	ovcar-3	ovarian:	n/a

No data

Variant related genes	Relation type
PPARD	CpG island

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10080361	0.81[ASN][1000 genomes]
rs10080411	0.89[ASN][1000 genomes]
rs10755687	0.92[ASN][1000 genomes]
rs10807150	0.91[ASN][1000 genomes]
rs10947540	0.81[ASN][1000 genomes]
rs10947542	0.85[ASN][1000 genomes]
rs1108709	0.88[ASN][1000 genomes]
rs1194	0.81[ASN][1000 genomes]
rs12173347	0.83[ASN][1000 genomes]
rs12173582	0.81[ASN][1000 genomes]
rs12211765	0.87[ASN][1000 genomes]
rs13197551	0.81[ASN][1000 genomes]
rs1557567	0.91[ASN][1000 genomes]
rs1557568	0.91[ASN][1000 genomes]
rs1888823	0.81[ASN][1000 genomes]
rs1888824	0.81[ASN][1000 genomes]
rs1888825	0.81[ASN][1000 genomes]
rs1894650	0.81[ASN][1000 genomes]
rs1894651	0.81[ASN][1000 genomes]
rs1894652	0.83[ASN][1000 genomes]
rs1894653	0.83[ASN][1000 genomes]
rs1929847	0.81[ASN][1000 genomes]
rs1987673	0.88[ASN][1000 genomes]
rs2071920	0.91[ASN][1000 genomes]
rs2267657	0.89[ASN][1000 genomes]
rs2267660	0.84[ASN][1000 genomes]
rs2267661	0.84[ASN][1000 genomes]
rs2267662	0.81[ASN][1000 genomes]
rs2267663	0.81[ASN][1000 genomes]
rs2267664	0.86[ASN][1000 genomes]
rs2284195	0.81[ASN][1000 genomes]
rs2284196	0.87[ASN][1000 genomes]
rs2395614	0.89[ASN][1000 genomes]
rs2395621	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3777742	0.88[ASN][1000 genomes]
rs3777743	0.88[ASN][1000 genomes]
rs3777744	0.91[ASN][1000 genomes]
rs3798342	0.84[ASN][1000 genomes]
rs3800382	0.84[ASN][1000 genomes]
rs3800383	0.82[ASN][1000 genomes]
rs3800386	0.81[ASN][1000 genomes]
rs3800387	0.81[ASN][1000 genomes]
rs3800388	0.81[ASN][1000 genomes]
rs3800393	0.86[ASN][1000 genomes]
rs3800401	0.83[ASN][1000 genomes]
rs4583983	0.86[ASN][1000 genomes]
rs4711411	0.81[ASN][1000 genomes]
rs4711413	0.83[ASN][1000 genomes]
rs4711414	0.81[ASN][1000 genomes]
rs4713845	0.81[ASN][1000 genomes]
rs4713848	0.81[ASN][1000 genomes]
rs4713850	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713853	0.92[ASN][1000 genomes]
rs58925593	0.84[ASN][1000 genomes]
rs62403575	0.81[ASN][1000 genomes]
rs6457812	0.91[ASN][1000 genomes]
rs6902523	0.81[ASN][1000 genomes]
rs6906987	0.90[ASN][1000 genomes]
rs6907324	0.81[ASN][1000 genomes]
rs6907364	0.92[ASN][1000 genomes]
rs6913037	0.81[ASN][1000 genomes]
rs6913475	0.97[ASN][1000 genomes]
rs6920432	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6920747	0.81[ASN][1000 genomes]
rs6930562	0.90[ASN][1000 genomes]
rs6938946	0.84[ASN][1000 genomes]
rs6940375	0.82[ASN][1000 genomes]
rs6941471	0.89[ASN][1000 genomes]
rs7757316	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7758192	0.83[ASN][1000 genomes]
rs7769906	0.81[ASN][1000 genomes]
rs7772212	0.81[ASN][1000 genomes]
rs7772302	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8205	0.91[ASN][1000 genomes]
rs9296150	0.81[ASN][1000 genomes]
rs9348970	0.81[ASN][1000 genomes]
rs9366882	0.91[ASN][1000 genomes]
rs9366883	0.81[ASN][1000 genomes]
rs9366885	0.87[ASN][1000 genomes]
rs9368854	0.81[ASN][1000 genomes]
rs9368857	0.84[ASN][1000 genomes]
rs9368859	0.83[ASN][1000 genomes]
rs9368860	0.83[ASN][1000 genomes]
rs9380497	0.83[ASN][1000 genomes]
rs9380501	0.81[ASN][1000 genomes]
rs9380502	0.84[ASN][1000 genomes]
rs9394289	0.81[ASN][1000 genomes]
rs9462065	0.88[ASN][1000 genomes]
rs9462072	0.84[ASN][1000 genomes]
rs9469958	0.81[ASN][1000 genomes]
rs9469972	0.91[ASN][1000 genomes]
rs9469975	0.90[ASN][1000 genomes]
rs9469982	0.91[ASN][1000 genomes]
rs9469997	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469998	0.98[ASN][1000 genomes]
rs965272	0.91[ASN][1000 genomes]
rs968828	0.88[ASN][1000 genomes]
rs975496	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
2	chr6:35291600-35309600	Weak transcription	Dnd41	blood
3	chr6:35293200-35309600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:35300400-35308800	Weak transcription	Placenta	Placenta
5	chr6:35300600-35309800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:35300800-35309600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:35300800-35309800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:35305600-35309600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:35306200-35307200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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