Variant report

Variant	rs2267660
Chromosome Location	chr6:35242123-35242124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35237647..35239255-chr6:35240829..35243280,2	K562	blood:
2	chr6:35229256..35231730-chr6:35240126..35242967,3	K562	blood:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10080361	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1013907	0.94[ASN][1000 genomes]
rs10755687	0.89[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10807150	0.89[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10947540	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1108709	0.82[ASN][1000 genomes]
rs1194	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12173347	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12173582	1.00[CEU][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12211765	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12211943	0.84[ASN][1000 genomes]
rs13214290	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1557567	0.89[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1557568	0.89[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1590381	0.82[ASN][1000 genomes]
rs1888822	0.83[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1888823	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1888824	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1888825	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1894650	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1894651	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1894652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1929847	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1929849	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1987673	0.89[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2006184	0.90[ASN][1000 genomes]
rs2018373	0.88[ASN][1000 genomes]
rs2032538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2057537	0.89[MEX][hapmap];1.00[TSI][hapmap]
rs2071920	0.89[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2183834	0.88[ASN][1000 genomes]
rs2267657	0.89[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2267658	0.94[ASN][1000 genomes]
rs2267661	0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267662	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2267663	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2267664	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2284195	0.94[ASN][1000 genomes]
rs2296194	0.89[MEX][hapmap];1.00[TSI][hapmap]
rs2395614	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2395621	0.82[ASN][1000 genomes]
rs3777742	0.82[ASN][1000 genomes]
rs3777743	0.83[ASN][1000 genomes]
rs3777744	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs3798342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798343	0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs3800382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800385	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3800386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800392	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3800393	0.81[ASN][1000 genomes]
rs3800396	0.86[ASN][1000 genomes]
rs3800398	0.86[ASN][1000 genomes]
rs3800399	0.86[ASN][1000 genomes]
rs3800400	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823434	1.00[ASW][hapmap];0.81[GIH][hapmap]
rs4583983	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4711409	0.94[ASN][1000 genomes]
rs4711411	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4711413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711414	0.95[ASN][1000 genomes]
rs4713841	0.86[ASN][1000 genomes]
rs4713845	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4713847	0.81[ASN][1000 genomes]
rs4713848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713850	0.84[ASN][1000 genomes]
rs58925593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62403575	0.95[ASN][1000 genomes]
rs6457812	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs68164647	0.86[ASN][1000 genomes]
rs6902523	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6907324	0.95[ASN][1000 genomes]
rs6907364	0.81[ASN][1000 genomes]
rs6907573	0.88[ASN][1000 genomes]
rs6907795	0.86[ASN][1000 genomes]
rs6913037	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6913475	0.82[ASN][1000 genomes]
rs6913941	0.86[ASN][1000 genomes]
rs6916364	0.86[ASN][1000 genomes]
rs6920432	0.82[ASN][1000 genomes]
rs6920747	0.95[ASN][1000 genomes]
rs6927730	0.86[ASN][1000 genomes]
rs6928769	0.92[ASN][1000 genomes]
rs6930562	0.83[ASN][1000 genomes]
rs6933979	0.80[CHD][hapmap]
rs6938946	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6941471	0.84[ASN][1000 genomes]
rs72909061	0.92[ASN][1000 genomes]
rs7757316	0.82[ASN][1000 genomes]
rs7763946	0.93[ASN][1000 genomes]
rs7769906	0.94[ASN][1000 genomes]
rs7772212	0.95[ASN][1000 genomes]
rs7772302	0.81[ASN][1000 genomes]
rs8205	0.85[ASN][1000 genomes]
rs914547	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9296144	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9296150	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9348962	0.89[MEX][hapmap];1.00[TSI][hapmap]
rs9348974	0.89[EUR][1000 genomes]
rs9357194	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs9366882	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9366883	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9366885	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9368852	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368853	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368859	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368860	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368865	0.89[EUR][1000 genomes]
rs9368868	0.81[GIH][hapmap]
rs9380491	1.00[CEU][hapmap]
rs9380492	0.89[MEX][hapmap];1.00[TSI][hapmap]
rs9380498	0.86[ASN][1000 genomes]
rs9380500	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9380501	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9380502	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380505	0.89[EUR][1000 genomes]
rs9380507	0.89[EUR][1000 genomes]
rs9394283	0.93[ASN][1000 genomes]
rs9394288	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9394289	0.94[ASN][1000 genomes]
rs9462065	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9462072	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469964	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9469972	0.89[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9469975	0.85[ASN][1000 genomes]
rs9469979	0.94[ASN][1000 genomes]
rs9469982	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9469997	0.84[ASN][1000 genomes]
rs9469998	0.82[ASN][1000 genomes]
rs965272	0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs968828	0.82[ASN][1000 genomes]
rs975496	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs991145	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228200-35243000	Weak transcription	Aorta	Aorta
2	chr6:35228400-35247800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:35228400-35248000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:35228600-35243000	Weak transcription	HSMM	muscle
6	chr6:35228600-35243000	Weak transcription	NH-A	brain
7	chr6:35228600-35248400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:35228600-35248800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:35228800-35242400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:35228800-35242400	Weak transcription	NHEK	skin
12	chr6:35228800-35243200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:35228800-35244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:35228800-35248800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:35228800-35248800	Weak transcription	Spleen	Spleen
16	chr6:35228800-35249000	Weak transcription	Fetal Intestine Large	intestine
17	chr6:35228800-35249000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:35229000-35242400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:35229000-35243000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:35229000-35248800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:35229000-35248800	Weak transcription	Thymus	Thymus
23	chr6:35229000-35249000	Weak transcription	Liver	Liver
24	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
25	chr6:35229200-35243000	Weak transcription	Adipose Nuclei	Adipose
26	chr6:35229200-35246200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:35229200-35248800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:35229200-35248800	Weak transcription	Dnd41	blood
29	chr6:35229200-35250200	Weak transcription	Pancreas	Pancrea
30	chr6:35230600-35242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:35230800-35242600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:35230800-35242800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:35231200-35243000	Weak transcription	Placenta	Placenta
34	chr6:35231200-35248400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr6:35231600-35242200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:35232200-35248600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr6:35232200-35248800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:35232400-35248800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:35232400-35250200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:35232600-35243000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:35232600-35248400	Weak transcription	Fetal Lung	lung
42	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
43	chr6:35232800-35248800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr6:35232800-35248800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:35232800-35249000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:35233600-35248800	Weak transcription	Primary B cells from cord blood	blood
47	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
48	chr6:35235200-35242800	Weak transcription	Ovary	ovary
49	chr6:35235600-35243000	Weak transcription	Right Ventricle	heart
50	chr6:35235600-35246400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links