Variant report

Variant	rs2032538
Chromosome Location	chr6:35184711-35184712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35182253..35185037-chr6:35189923..35191677,4	MCF-7	breast:
2	chr6:35182919..35187135-chr6:35197439..35201271,4	K562	blood:
3	chr6:35182418..35185303-chr6:35197191..35199627,2	MCF-7	breast:
4	chr6:34855917..34858790-chr6:35184012..35186610,2	K562	blood:
5	chr6:35178452..35180834-chr6:35183642..35187997,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064999	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10080361	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs10755687	0.82[JPT][hapmap]
rs10807150	0.82[JPT][hapmap]
rs10947540	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1194	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12173347	1.00[CEU][hapmap]
rs12173582	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs13214290	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1557567	0.82[JPT][hapmap]
rs1557568	0.82[JPT][hapmap]
rs1888822	0.90[JPT][hapmap]
rs1888823	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1888824	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1888825	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1894650	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1894651	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1894653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1929847	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1929849	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1987673	0.82[JPT][hapmap]
rs2057537	0.85[YRI][hapmap]
rs2071920	0.82[JPT][hapmap]
rs2267657	0.82[JPT][hapmap]
rs2267660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2267661	0.95[JPT][hapmap]
rs2267662	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2267663	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2267664	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2395614	0.82[JPT][hapmap]
rs3777744	0.82[JPT][hapmap]
rs3798342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3798343	0.95[JPT][hapmap]
rs3800382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3800383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3800385	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3800386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3800387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3800388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3800392	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4711411	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4711413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4713845	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4713848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6457812	0.82[JPT][hapmap]
rs6902523	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6913037	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6938946	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs8205	0.80[JPT][hapmap]
rs914547	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9296144	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs9348962	0.85[YRI][hapmap]
rs9366882	0.82[JPT][hapmap]
rs9366883	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9368854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9368857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9380491	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs9380492	0.85[YRI][hapmap]
rs9380500	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9380501	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9394288	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9462065	0.82[JPT][hapmap]
rs9469964	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9469972	0.82[JPT][hapmap]
rs9469982	0.82[JPT][hapmap]
rs960716	0.87[YRI][hapmap]
rs965272	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs975496	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	esv2486570	chr6:35184710-35184711	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv337117	chr6:35184710-35184711	Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2022859	chr6:35184710-35184712	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35181200-35185200	Active TSS	Fetal Kidney	kidney
2	chr6:35182400-35185000	Bivalent Enhancer	Fetal Lung	lung
3	chr6:35182400-35209000	Weak transcription	A549	lung
4	chr6:35182600-35184800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:35182600-35184800	Weak transcription	HSMM	muscle
6	chr6:35182600-35185400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:35182600-35186600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:35182600-35186600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:35182600-35186600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr6:35182600-35198600	Weak transcription	Gastric	stomach
11	chr6:35182800-35184800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:35182800-35186600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:35182800-35188000	Enhancers	Left Ventricle	heart
14	chr6:35183000-35186200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:35183200-35184800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:35183200-35185200	Transcr. at gene 5' and 3'	Osteobl	bone
17	chr6:35183200-35185400	Bivalent Enhancer	Fetal Stomach	stomach
18	chr6:35183200-35198800	Weak transcription	Ovary	ovary
19	chr6:35183400-35184800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:35183400-35185200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr6:35183400-35185800	Weak transcription	Right Atrium	heart
22	chr6:35183400-35186600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
23	chr6:35183600-35184800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:35183600-35185000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:35183600-35185200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
26	chr6:35183600-35186400	Enhancers	NHDF-Ad	bronchial
27	chr6:35183600-35189000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:35183800-35185200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
29	chr6:35183800-35185200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
30	chr6:35183800-35185200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
31	chr6:35183800-35185200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:35183800-35185200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:35183800-35185800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:35184000-35186800	Enhancers	Aorta	Aorta
35	chr6:35184200-35185400	Active TSS	Muscle Satellite Cultured Cells	--
36	chr6:35184400-35184800	Flanking Active TSS	Fetal Heart	heart
37	chr6:35184400-35185000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
38	chr6:35184400-35186400	Weak transcription	Right Ventricle	heart
39	chr6:35184400-35186600	Enhancers	Placenta	Placenta
40	chr6:35184600-35184800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:35184600-35184800	Bivalent Enhancer	Fetal Brain Female	brain
42	chr6:35184600-35185000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:35184600-35185000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
44	chr6:35184600-35185000	Flanking Active TSS	NH-A	brain
45	chr6:35184600-35185400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:35184600-35186600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:35184600-35186600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
48	chr6:35184600-35186800	Bivalent Enhancer	Fetal Muscle Leg	muscle

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