Variant report

Variant	rs9296144
Chromosome Location	chr6:35228215-35228216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35227214..35229292-chr6:35260435..35263392,2	K562	blood:
2	chr6:34202035..34205684-chr6:35227191..35229008,3	K562	blood:
3	chr6:35227857..35229725-chr6:35245132..35247985,2	K562	blood:
4	chr6:35227633..35229883-chr6:35250389..35252972,3	K562	blood:
5	chr11:62608457..62610625-chr6:35227226..35229917,3	K562	blood:
6	chr6:35227208..35228940-chr6:35464081..35465836,2	K562	blood:
7	chr6:35226889..35228758-chr6:35259523..35261436,2	MCF-7	breast:
8	chr6:35226066..35229330-chr6:35434346..35438215,4	K562	blood:
9	chr6:34856224..34858095-chr6:35226235..35229197,2	MCF-7	breast:
10	chr6:34854986..34858344-chr6:35226281..35229493,3	K562	blood:
11	chr6:35226330..35228825-chr6:35434969..35437843,3	MCF-7	breast:
12	chr6:35227094..35229802-chr6:35433183..35436613,4	K562	blood:
13	chr6:35227789..35229882-chr6:35245132..35248269,3	K562	blood:
14	chr6:35227851..35229511-chr6:35235858..35238683,2	MCF-7	breast:
15	chr2:233561381..233562276-chr6:35227526..35228227,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000217004	Chromatin interaction
ENSG00000204120	Chromatin interaction
ENSG00000064999	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000064995	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10080361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1013907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10755687	0.85[ASN][1000 genomes]
rs10807150	0.83[CHB][hapmap];0.89[ASN][1000 genomes]
rs10947540	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10947542	0.83[ASN][1000 genomes]
rs1108709	0.86[ASN][1000 genomes]
rs1194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12173347	0.83[ASN][1000 genomes]
rs12173582	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12211765	0.87[ASN][1000 genomes]
rs13214290	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1557567	0.83[CHB][hapmap];0.89[ASN][1000 genomes]
rs1557568	0.89[ASN][1000 genomes]
rs1590381	0.85[ASN][1000 genomes]
rs1888822	0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1888823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1888824	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1888825	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894650	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894651	0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894652	0.94[ASN][1000 genomes]
rs1894653	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1929847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1929848	0.80[CEU][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs1929849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1987673	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs2006184	0.94[ASN][1000 genomes]
rs2018373	0.92[ASN][1000 genomes]
rs2032538	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2071920	0.83[CHB][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2183834	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2267657	0.83[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2267658	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2267660	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2267661	0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2267662	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2267663	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2267664	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2284195	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2395614	0.84[CHB][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34156110	0.82[ASN][1000 genomes]
rs3777742	0.86[ASN][1000 genomes]
rs3777743	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798342	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs3798343	0.90[JPT][hapmap]
rs3800382	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs3800383	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs3800385	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800386	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3800387	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3800388	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3800392	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800393	0.84[ASN][1000 genomes]
rs3800396	0.89[ASN][1000 genomes]
rs3800398	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800399	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800401	0.81[ASN][1000 genomes]
rs4583983	0.87[ASN][1000 genomes]
rs4711409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711411	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711413	0.93[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4711414	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713841	0.89[ASN][1000 genomes]
rs4713844	0.81[EUR][1000 genomes]
rs4713845	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713847	0.85[ASN][1000 genomes]
rs4713848	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs58925593	0.94[ASN][1000 genomes]
rs62403575	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457812	0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs68164647	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6902523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6906987	0.83[ASN][1000 genomes]
rs6907324	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6907364	0.84[ASN][1000 genomes]
rs6907573	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6907795	0.89[ASN][1000 genomes]
rs6913037	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs6913475	0.83[ASN][1000 genomes]
rs6913941	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6916364	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6919534	0.80[CEU][hapmap];0.90[YRI][hapmap]
rs6920432	0.82[ASN][1000 genomes]
rs6920747	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6927730	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6928769	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6930562	0.85[ASN][1000 genomes]
rs6933979	0.83[CHB][hapmap]
rs6938946	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6941471	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72909061	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7757316	0.82[ASN][1000 genomes]
rs7763946	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7769906	0.98[ASN][1000 genomes]
rs7772212	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7772302	0.81[ASN][1000 genomes]
rs8205	0.88[CEU][hapmap];0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs914547	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs9296150	0.81[ASN][1000 genomes]
rs9348970	0.88[CEU][hapmap]
rs9366882	0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs9366883	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366885	0.87[ASN][1000 genomes]
rs9368854	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9368857	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9368859	0.83[ASN][1000 genomes]
rs9368860	0.83[ASN][1000 genomes]
rs9380497	0.81[ASN][1000 genomes]
rs9380498	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9380500	0.83[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs9380501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380502	0.89[ASN][1000 genomes]
rs9394283	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394288	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9394289	0.98[ASN][1000 genomes]
rs9462065	0.84[CHB][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9462072	0.84[ASN][1000 genomes]
rs9469953	0.83[CHB][hapmap]
rs9469964	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469972	0.83[CHB][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469975	0.88[ASN][1000 genomes]
rs9469979	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9469982	0.88[CEU][hapmap];0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs9469998	0.82[ASN][1000 genomes]
rs965272	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs968828	0.86[ASN][1000 genomes]
rs975496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs991145	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2750621	chr6:35227168-35228219	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35226000-35228400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:35226200-35228400	Active TSS	Left Ventricle	heart
3	chr6:35226400-35228400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:35226400-35228400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:35226400-35228400	Active TSS	Psoas Muscle	Psoas
6	chr6:35226400-35228600	Active TSS	H9 Cell Line	embryonic stem cell
7	chr6:35226400-35228600	Active TSS	HSMMtube	muscle
8	chr6:35226600-35228400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:35226600-35228400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:35226600-35228400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:35226600-35228400	Active TSS	Brain Germinal Matrix	brain
12	chr6:35226600-35228400	Active TSS	Right Ventricle	heart
13	chr6:35226600-35228800	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:35227000-35228400	Active TSS	Colonic Mucosa	Colon
15	chr6:35227800-35228400	Flanking Active TSS	Primary B cells from peripheral blood	blood
16	chr6:35227800-35228400	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr6:35227800-35228400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr6:35227800-35228400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:35227800-35228400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr6:35227800-35228400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:35227800-35228400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr6:35227800-35228400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:35227800-35228400	Flanking Active TSS	Fetal Muscle Leg	muscle
24	chr6:35227800-35228400	Flanking Active TSS	Placenta	Placenta
25	chr6:35227800-35228400	Flanking Active TSS	Fetal Thymus	thymus
26	chr6:35227800-35228400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr6:35227800-35228600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr6:35227800-35228600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr6:35227800-35228600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:35227800-35228600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:35227800-35228600	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr6:35227800-35228600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:35227800-35228600	Active TSS	Right Atrium	heart
34	chr6:35227800-35228800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr6:35227800-35228800	Enhancers	Spleen	Spleen
36	chr6:35227800-35228800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:35228000-35228400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:35228000-35228400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr6:35228000-35228400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:35228000-35228400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
41	chr6:35228000-35228400	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr6:35228000-35228400	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr6:35228000-35228400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:35228000-35228400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:35228000-35228400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr6:35228000-35228400	Flanking Active TSS	Liver	Liver
47	chr6:35228000-35228400	Flanking Active TSS	Brain Angular Gyrus	brain
48	chr6:35228000-35228400	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr6:35228000-35228400	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr6:35228000-35228400	Flanking Active TSS	Duodenum Mucosa	Duodenum

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