Variant report

Variant	rs58925593
Chromosome Location	chr6:35211990-35211991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35211292..35213098-chr6:35218408..35220961,2	K562	blood:
2	chr6:35203567..35205850-chr6:35210606..35213440,2	MCF-7	breast:
3	chr6:35211385..35214210-chr6:35227396..35229184,2	MCF-7	breast:
4	chr6:35208399..35210784-chr6:35211511..35213667,2	MCF-7	breast:
5	chr6:35210963..35213081-chr6:35462686..35465229,2	K562	blood:
6	chr6:35210963..35213081-chr6:35462686..35466040,3	K562	blood:
7	chr6:35211520..35214360-chr6:35225180..35229197,4	K562	blood:
8	chr6:35195991..35200691-chr6:35207151..35212650,5	K562	blood:
9	chr6:35196748..35200110-chr6:35208798..35212197,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10080361	0.94[ASN][1000 genomes]
rs1013907	0.94[ASN][1000 genomes]
rs10755687	0.81[ASN][1000 genomes]
rs10807150	0.85[ASN][1000 genomes]
rs10947540	0.94[ASN][1000 genomes]
rs1108709	0.82[ASN][1000 genomes]
rs1194	0.95[ASN][1000 genomes]
rs12173347	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12173582	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12211765	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12211943	0.84[ASN][1000 genomes]
rs13214290	0.93[ASN][1000 genomes]
rs1557567	0.85[ASN][1000 genomes]
rs1557568	0.85[ASN][1000 genomes]
rs1590381	0.82[ASN][1000 genomes]
rs1888822	0.81[ASN][1000 genomes]
rs1888823	0.95[ASN][1000 genomes]
rs1888824	0.94[ASN][1000 genomes]
rs1888825	0.94[ASN][1000 genomes]
rs1894650	0.94[ASN][1000 genomes]
rs1894651	0.94[ASN][1000 genomes]
rs1894652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1929847	0.95[ASN][1000 genomes]
rs1929849	0.93[ASN][1000 genomes]
rs1987673	0.82[ASN][1000 genomes]
rs2006184	0.90[ASN][1000 genomes]
rs2018373	0.88[ASN][1000 genomes]
rs2071920	0.85[ASN][1000 genomes]
rs2183834	0.88[ASN][1000 genomes]
rs2267657	0.84[ASN][1000 genomes]
rs2267658	0.94[ASN][1000 genomes]
rs2267660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267662	0.95[ASN][1000 genomes]
rs2267663	0.94[ASN][1000 genomes]
rs2267664	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2284195	0.94[ASN][1000 genomes]
rs2395614	0.84[ASN][1000 genomes]
rs2395621	0.82[ASN][1000 genomes]
rs3777742	0.82[ASN][1000 genomes]
rs3777743	0.83[ASN][1000 genomes]
rs3798342	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798343	0.84[ASN][1000 genomes]
rs3800382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800385	0.93[ASN][1000 genomes]
rs3800386	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800387	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800388	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800392	0.92[ASN][1000 genomes]
rs3800393	0.81[ASN][1000 genomes]
rs3800396	0.86[ASN][1000 genomes]
rs3800398	0.86[ASN][1000 genomes]
rs3800399	0.86[ASN][1000 genomes]
rs3800400	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4583983	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4711409	0.94[ASN][1000 genomes]
rs4711411	0.94[ASN][1000 genomes]
rs4711413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711414	0.95[ASN][1000 genomes]
rs4713841	0.86[ASN][1000 genomes]
rs4713845	0.94[ASN][1000 genomes]
rs4713847	0.81[ASN][1000 genomes]
rs4713848	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713850	0.84[ASN][1000 genomes]
rs62403575	0.95[ASN][1000 genomes]
rs6457812	0.85[ASN][1000 genomes]
rs68164647	0.86[ASN][1000 genomes]
rs6902523	0.95[ASN][1000 genomes]
rs6907324	0.95[ASN][1000 genomes]
rs6907364	0.81[ASN][1000 genomes]
rs6907573	0.88[ASN][1000 genomes]
rs6907795	0.86[ASN][1000 genomes]
rs6913037	0.94[ASN][1000 genomes]
rs6913475	0.82[ASN][1000 genomes]
rs6913941	0.86[ASN][1000 genomes]
rs6916364	0.86[ASN][1000 genomes]
rs6920432	0.82[ASN][1000 genomes]
rs6920747	0.95[ASN][1000 genomes]
rs6927730	0.86[ASN][1000 genomes]
rs6928769	0.92[ASN][1000 genomes]
rs6930562	0.83[ASN][1000 genomes]
rs6938946	0.91[ASN][1000 genomes]
rs6941471	0.84[ASN][1000 genomes]
rs72909061	0.92[ASN][1000 genomes]
rs7757316	0.82[ASN][1000 genomes]
rs7763946	0.93[ASN][1000 genomes]
rs7769906	0.94[ASN][1000 genomes]
rs7772212	0.95[ASN][1000 genomes]
rs7772302	0.81[ASN][1000 genomes]
rs8205	0.85[ASN][1000 genomes]
rs914547	0.91[ASN][1000 genomes]
rs9296144	0.94[ASN][1000 genomes]
rs9296150	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9348974	0.89[EUR][1000 genomes]
rs9366882	0.85[ASN][1000 genomes]
rs9366883	0.94[ASN][1000 genomes]
rs9366885	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9368852	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368853	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368854	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368857	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368859	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368860	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368865	0.89[EUR][1000 genomes]
rs9380498	0.86[ASN][1000 genomes]
rs9380501	0.95[ASN][1000 genomes]
rs9380502	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380505	0.89[EUR][1000 genomes]
rs9380507	0.89[EUR][1000 genomes]
rs9394283	0.93[ASN][1000 genomes]
rs9394289	0.94[ASN][1000 genomes]
rs9462065	0.82[ASN][1000 genomes]
rs9462072	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469964	0.93[ASN][1000 genomes]
rs9469972	0.85[ASN][1000 genomes]
rs9469975	0.85[ASN][1000 genomes]
rs9469979	0.94[ASN][1000 genomes]
rs9469982	0.85[ASN][1000 genomes]
rs9469997	0.84[ASN][1000 genomes]
rs9469998	0.82[ASN][1000 genomes]
rs965272	0.85[ASN][1000 genomes]
rs968828	0.82[ASN][1000 genomes]
rs975496	0.95[ASN][1000 genomes]
rs991145	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35186400-35212000	Weak transcription	NHDF-Ad	bronchial
2	chr6:35186800-35212000	Weak transcription	Dnd41	blood
3	chr6:35190200-35212000	Weak transcription	Brain Angular Gyrus	brain
4	chr6:35191200-35212000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
7	chr6:35199200-35212200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:35199400-35212000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:35199400-35216200	Weak transcription	Brain Substantia Nigra	brain
10	chr6:35199600-35215600	Weak transcription	Hela-S3	cervix
11	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
12	chr6:35199800-35212200	Weak transcription	HepG2	liver
13	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
14	chr6:35200600-35225000	Weak transcription	Fetal Brain Male	brain
15	chr6:35201400-35226200	Weak transcription	Stomach Mucosa	stomach
16	chr6:35202600-35225800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:35203400-35226000	Weak transcription	HSMMtube	muscle
18	chr6:35204400-35215400	Weak transcription	GM12878-XiMat	blood
19	chr6:35205600-35212000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:35205600-35226000	Weak transcription	HSMM	muscle
21	chr6:35205800-35213400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:35206000-35215400	Weak transcription	K562	blood
23	chr6:35206600-35215600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:35206800-35216000	Strong transcription	Osteobl	bone
25	chr6:35207000-35213000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:35207000-35215800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:35207400-35212200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:35207400-35226200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr6:35207800-35214600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:35207800-35224000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:35208000-35215800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:35208000-35216000	Weak transcription	HUVEC	blood vessel
33	chr6:35208200-35226000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:35208400-35213600	Weak transcription	Lung	lung
35	chr6:35208400-35226000	Weak transcription	NHEK	skin
36	chr6:35208600-35212000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:35208600-35214600	Strong transcription	Fetal Intestine Small	intestine
38	chr6:35208600-35220200	Strong transcription	Fetal Stomach	stomach
39	chr6:35209000-35216800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:35209000-35217400	Weak transcription	Colonic Mucosa	Colon
41	chr6:35209200-35214600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr6:35209200-35216400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:35209400-35213800	Strong transcription	Thymus	Thymus
44	chr6:35209400-35216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:35209400-35216200	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:35209600-35212400	Weak transcription	A549	lung
47	chr6:35209600-35213000	Strong transcription	Right Ventricle	heart
48	chr6:35209600-35213400	Strong transcription	Fetal Kidney	kidney
49	chr6:35209600-35214600	Strong transcription	Fetal Brain Female	brain
50	chr6:35209600-35214800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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