Variant report

Variant	rs9368852
Chromosome Location	chr6:35157326-35157327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35150577..35155004-chr6:35155292..35158233,5	MCF-7	breast:
2	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
3	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12173347	0.89[EUR][1000 genomes]
rs12173582	0.89[EUR][1000 genomes]
rs12211765	1.00[EUR][1000 genomes]
rs1894652	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1894653	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2267660	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2267661	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2267664	1.00[EUR][1000 genomes]
rs3798342	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800382	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800383	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4583983	1.00[EUR][1000 genomes]
rs4711413	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713848	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58925593	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296150	0.89[EUR][1000 genomes]
rs9348974	0.89[EUR][1000 genomes]
rs9366885	1.00[EUR][1000 genomes]
rs9368853	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368857	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368859	1.00[EUR][1000 genomes]
rs9368860	0.95[EUR][1000 genomes]
rs9368865	0.89[EUR][1000 genomes]
rs9380502	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380505	0.89[EUR][1000 genomes]
rs9380507	0.89[EUR][1000 genomes]
rs9462072	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35149800-35158000	Weak transcription	Aorta	Aorta
2	chr6:35151800-35159600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:35154000-35158200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:35154000-35158200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:35154000-35169800	Weak transcription	Right Atrium	heart
6	chr6:35154200-35157800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:35154200-35158000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:35154200-35158000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:35154200-35158000	Weak transcription	Osteobl	bone
10	chr6:35154200-35158200	Weak transcription	NHDF-Ad	bronchial
11	chr6:35154200-35163400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:35154400-35158000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:35154400-35158000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:35154400-35159600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:35154400-35169200	Weak transcription	Fetal Heart	heart

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