Variant report

Variant	rs9368853
Chromosome Location	chr6:35165296-35165297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35132111..35134343-chr6:35165160..35168099,4	MCF-7	breast:
2	chr6:35139023..35142448-chr6:35162991..35165848,3	MCF-7	breast:
3	chr6:35146928..35151829-chr6:35162484..35168348,5	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10080361	0.80[JPT][hapmap]
rs12173347	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12173582	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12211765	1.00[EUR][1000 genomes]
rs16872324	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs16872484	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[AFR][1000 genomes]
rs1894652	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1894653	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2032538	1.00[CEU][hapmap]
rs2057537	1.00[CEU][hapmap]
rs2267660	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2267661	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2267664	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2296194	1.00[CEU][hapmap]
rs3756855	0.86[AFR][1000 genomes]
rs3798342	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800382	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800383	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800386	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800387	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800388	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800400	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4583983	1.00[EUR][1000 genomes]
rs4711413	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713848	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58925593	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6457803	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs9296144	0.80[JPT][hapmap]
rs9296150	0.89[EUR][1000 genomes]
rs9348962	1.00[CEU][hapmap]
rs9348966	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs9348974	0.89[EUR][1000 genomes]
rs9357194	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9366885	1.00[EUR][1000 genomes]
rs9368852	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368854	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368857	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368859	1.00[EUR][1000 genomes]
rs9368860	0.95[EUR][1000 genomes]
rs9368865	0.89[EUR][1000 genomes]
rs9380488	1.00[CEU][hapmap]
rs9380491	1.00[CEU][hapmap]
rs9380492	1.00[CEU][hapmap]
rs9380502	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9380505	0.89[EUR][1000 genomes]
rs9380507	0.89[EUR][1000 genomes]
rs9462072	1.00[EUR][1000 genomes]
rs960716	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35154000-35169800	Weak transcription	Right Atrium	heart
2	chr6:35154400-35169200	Weak transcription	Fetal Heart	heart
3	chr6:35158600-35167200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:35161000-35167800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:35161600-35167800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:35161600-35169400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:35161600-35170000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:35163200-35171200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:35163600-35165400	Weak transcription	HepG2	liver
10	chr6:35163600-35167200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:35163600-35171000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:35164800-35165400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:35164800-35165400	Enhancers	HMEC	breast
14	chr6:35164800-35165600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:35164800-35165600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr6:35165000-35165400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:35165200-35166200	Weak transcription	Osteobl	bone
18	chr6:35165200-35169400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:35165200-35171200	Weak transcription	NH-A	brain

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