Variant report

Variant	rs16872324
Chromosome Location	chr6:35118860-35118861
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35116846..35119289-chr6:35140930..35142825,2	MCF-7	breast:
2	chr6:35118855..35121667-chr6:35128574..35130894,2	MCF-7	breast:
3	chr6:35117065..35119670-chr6:35224171..35227113,2	K562	blood:
4	chr6:35112668..35114586-chr6:35117324..35120218,2	MCF-7	breast:
5	chr6:35118710..35120443-chr6:35162484..35164592,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKS1A-1	chr6:35118455-35118890	ENSG00000244904

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16872484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1886242	1.00[YRI][hapmap]
rs2057537	1.00[CEU][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2296194	1.00[CEU][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756855	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6457803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457805	1.00[YRI][hapmap]
rs6908059	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940278	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73745098	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745102	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs765063	0.93[ASN][1000 genomes]
rs9348962	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs9348965	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348966	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368849	1.00[YRI][hapmap]
rs9380488	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380491	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs9380492	1.00[CEU][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380493	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs960716	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35114800-35119800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:35114800-35120000	Weak transcription	Brain Substantia Nigra	brain
3	chr6:35115200-35119400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:35115200-35119800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:35116000-35119600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:35116600-35120000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:35116800-35119400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:35116800-35119400	Weak transcription	HMEC	breast
9	chr6:35116800-35119600	Weak transcription	HSMM	muscle
10	chr6:35116800-35120000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:35116800-35121600	Weak transcription	GM12878-XiMat	blood
12	chr6:35116800-35129200	Weak transcription	Aorta	Aorta
13	chr6:35117000-35119400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:35117000-35119600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:35117000-35119600	Weak transcription	NH-A	brain
16	chr6:35117000-35119800	Weak transcription	NHEK	skin
17	chr6:35117000-35120400	Weak transcription	A549	lung
18	chr6:35117400-35119200	Weak transcription	Osteobl	bone
19	chr6:35117600-35119200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:35117600-35119400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:35117800-35120000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:35118000-35120000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:35118000-35120000	Weak transcription	NHDF-Ad	bronchial
24	chr6:35118400-35121200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:35118600-35119200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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