Variant report

Variant	rs9380493
Chromosome Location	chr6:35108394-35108395
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35107772..35108596-chr6:35208578..35209321,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16872324	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16872484	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2057537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2296194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3756855	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6908059	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940278	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73745098	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73745102	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs765063	0.86[ASN][1000 genomes]
rs9348965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9348966	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380488	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380492	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs960716	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35104000-35108600	Weak transcription	Ovary	ovary
2	chr6:35104400-35114000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:35105000-35108800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:35106000-35110400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:35106000-35113600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:35106200-35113400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:35107200-35108400	Enhancers	Fetal Stomach	stomach
8	chr6:35107200-35108800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:35107400-35109600	Enhancers	Stomach Mucosa	stomach
10	chr6:35107400-35110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:35107600-35108600	Weak transcription	Colonic Mucosa	Colon
12	chr6:35107600-35108600	Enhancers	Fetal Heart	heart
13	chr6:35107800-35108600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr6:35107800-35108600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
15	chr6:35107800-35108800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:35107800-35108800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:35107800-35109000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:35107800-35109600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:35108000-35108400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:35108000-35108400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:35108000-35108400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:35108000-35108400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:35108000-35108600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
24	chr6:35108000-35108600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:35108000-35108600	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr6:35108000-35108600	Enhancers	Fetal Brain Male	brain
27	chr6:35108000-35108600	Enhancers	Fetal Lung	lung
28	chr6:35108000-35108600	Bivalent Enhancer	Thymus	Thymus
29	chr6:35108000-35108800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:35108000-35108800	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:35108000-35108800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
32	chr6:35108000-35108800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:35108000-35109000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr6:35108000-35109200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:35108000-35109400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:35108000-35109400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
37	chr6:35108000-35109400	Enhancers	Spleen	Spleen
38	chr6:35108000-35109600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
39	chr6:35108000-35109600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
40	chr6:35108000-35109600	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:35108000-35109800	Bivalent Enhancer	Fetal Thymus	thymus
42	chr6:35108200-35108400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
43	chr6:35108200-35108600	Weak transcription	Adipose Nuclei	Adipose
44	chr6:35108200-35108800	Weak transcription	Primary T cells from cord blood	blood
45	chr6:35108200-35109000	Enhancers	Primary B cells from cord blood	blood
46	chr6:35108200-35109200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:35108200-35110200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:35108200-35110200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:35108200-35110200	Weak transcription	Liver	Liver
50	chr6:35108200-35110200	Weak transcription	HSMMtube	muscle

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