Variant report

Variant	rs9357194
Chromosome Location	chr6:35116221-35116222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1034449	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16872324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16872484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1886242	0.93[LWK][hapmap]
rs2057537	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2267660	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs2296194	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756855	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800383	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs3800386	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs3800387	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs3800388	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4711413	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4713848	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs6457803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6908059	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6940278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73745098	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745102	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs765063	0.91[ASN][1000 genomes]
rs9348962	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9348965	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9348966	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368849	0.93[LWK][hapmap]
rs9368854	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs9380488	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380489	1.00[YRI][hapmap]
rs9380491	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs9380492	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380493	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs960716	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35110200-35117000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:35113200-35118600	Enhancers	Fetal Heart	heart
3	chr6:35113400-35116800	Enhancers	Fetal Stomach	stomach
4	chr6:35113800-35117400	Enhancers	Osteobl	bone
5	chr6:35113800-35117600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:35113800-35117600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:35114000-35116400	Enhancers	Fetal Kidney	kidney
8	chr6:35114000-35117000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:35114000-35118000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:35114400-35116400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:35114400-35117400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:35114600-35116400	Enhancers	Rectal Smooth Muscle	rectum
13	chr6:35114600-35116600	Enhancers	Fetal Lung	lung
14	chr6:35114800-35116600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:35114800-35119800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:35114800-35120000	Weak transcription	Brain Substantia Nigra	brain
17	chr6:35115200-35116800	Enhancers	Aorta	Aorta
18	chr6:35115200-35117000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:35115200-35117400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:35115200-35119400	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:35115200-35119800	Weak transcription	Brain Anterior Caudate	brain
22	chr6:35115400-35116800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:35115400-35117000	Enhancers	HUVEC	blood vessel
24	chr6:35115600-35117000	Enhancers	NHLF	lung
25	chr6:35115800-35116400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr6:35115800-35116400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr6:35115800-35116400	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr6:35115800-35116400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:35115800-35116800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:35115800-35116800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:35115800-35116800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr6:35115800-35116800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:35115800-35116800	Enhancers	HMEC	breast
34	chr6:35115800-35116800	Enhancers	HSMM	muscle
35	chr6:35115800-35117000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:35115800-35117000	Enhancers	NHEK	skin
37	chr6:35116000-35116400	Enhancers	Adipose Nuclei	Adipose
38	chr6:35116000-35116400	Bivalent Enhancer	Placenta	Placenta
39	chr6:35116000-35116400	Enhancers	HSMMtube	muscle
40	chr6:35116000-35116400	Flanking Active TSS	NHDF-Ad	bronchial
41	chr6:35116000-35116600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr6:35116000-35116600	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr6:35116000-35116600	Flanking Active TSS	NH-A	brain
44	chr6:35116000-35116800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:35116000-35116800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:35116000-35116800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:35116000-35116800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:35116000-35116800	Enhancers	GM12878-XiMat	blood
49	chr6:35116000-35117000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:35116000-35117000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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