Variant report

Variant	rs16872484
Chromosome Location	chr6:35129871-35129872
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35118855..35121667-chr6:35128574..35130894,2	MCF-7	breast:
2	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
3	chr6:35126225..35131731-chr6:35132022..35136988,7	MCF-7	breast:
4	chr6:35115116..35116634-chr6:35129312..35132110,2	MCF-7	breast:
5	chr6:35129806..35132792-chr6:35197170..35199424,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKS1A-1	chr6:35127447-35132003	ENSG00000244904

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1034449	1.00[YRI][hapmap]
rs16872324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1894652	0.82[AFR][1000 genomes]
rs1894653	0.82[AFR][1000 genomes]
rs2057537	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2296194	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756855	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3798342	0.82[AFR][1000 genomes]
rs3800386	0.82[AFR][1000 genomes]
rs3800387	0.82[AFR][1000 genomes]
rs3800388	0.82[AFR][1000 genomes]
rs3800400	0.86[AFR][1000 genomes]
rs4711413	0.82[AFR][1000 genomes]
rs4713848	0.82[AFR][1000 genomes]
rs6457803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6908059	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6940278	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73745098	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745102	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs765063	0.93[ASN][1000 genomes]
rs9348962	1.00[CEU][hapmap]
rs9348965	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348966	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9357194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368853	0.86[AFR][1000 genomes]
rs9368854	0.82[AFR][1000 genomes]
rs9368857	0.82[AFR][1000 genomes]
rs9380488	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380489	1.00[YRI][hapmap]
rs9380491	1.00[CEU][hapmap]
rs9380492	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380493	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs960716	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35127600-35130600	Enhancers	Adipose Nuclei	Adipose
3	chr6:35127600-35130800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:35128200-35130000	Enhancers	Fetal Stomach	stomach
5	chr6:35128200-35130400	Enhancers	Fetal Kidney	kidney
6	chr6:35128200-35130400	Enhancers	HUVEC	blood vessel
7	chr6:35128600-35130200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:35128600-35130800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:35128600-35130800	Weak transcription	Right Atrium	heart
10	chr6:35128600-35130800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:35128600-35133200	Weak transcription	Esophagus	oesophagus
12	chr6:35128600-35133800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:35128600-35137400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:35128800-35130400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:35128800-35137400	Weak transcription	Brain Angular Gyrus	brain
16	chr6:35129000-35130600	Enhancers	Stomach Mucosa	stomach
17	chr6:35129000-35130600	Enhancers	NHDF-Ad	bronchial
18	chr6:35129200-35130200	Enhancers	Aorta	Aorta
19	chr6:35129200-35130600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:35129200-35130600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:35129200-35130600	Weak transcription	Spleen	Spleen
22	chr6:35129200-35130600	Enhancers	Osteobl	bone
23	chr6:35129200-35133200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:35129400-35130200	Flanking Active TSS	Liver	Liver
25	chr6:35129600-35130000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:35129600-35130800	Flanking Active TSS	HepG2	liver
27	chr6:35129800-35130000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:35129800-35130000	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr6:35129800-35130000	Enhancers	Lung	lung
30	chr6:35129800-35130200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:35129800-35130400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:35129800-35130600	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:35129800-35130800	Enhancers	Fetal Lung	lung
34	chr6:35129800-35130800	Enhancers	Left Ventricle	heart
35	chr6:35129800-35130800	Enhancers	Right Ventricle	heart
36	chr6:35129800-35131000	Enhancers	Pancreas	Pancrea

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