Variant report

Variant	rs6457803
Chromosome Location	chr6:35120225-35120226
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr6:35119898-35120308	HL-60	blood:	n/a	n/a
2	EP300	chr6:35120130-35120369	SK-N-SH_RA	brain:	n/a	n/a
3	BACH1	chr6:35120150-35120459	K562	blood:	n/a	n/a
4	FOS	chr6:35120165-35120906	MCF10A-Er-Src	breast:	n/a	n/a
5	MAFF	chr6:35120176-35120329	HepG2	liver:	n/a	chr6:35120272-35120290
6	MAFF	chr6:35120108-35120427	K562	blood:	n/a	chr6:35120272-35120290
7	JUND	chr6:35120104-35120409	HCT-116	colon:	n/a	n/a
8	MAFK	chr6:35120137-35120421	K562	blood:	n/a	chr6:35120273-35120288
9	FOS	chr6:35120155-35120355	MCF10A-Er-Src	breast:	n/a	n/a
10	EP300	chr6:35120174-35120363	SK-N-SH_RA	brain:	n/a	n/a
11	FOS	chr6:35120215-35120415	MCF10A-Er-Src	breast:	n/a	n/a
12	MAFK	chr6:35120194-35120359	HepG2	liver:	n/a	chr6:35120273-35120288
13	FOS	chr6:35120176-35120889	MCF10A-Er-Src	breast:	n/a	n/a
14	JUND	chr6:35120118-35120375	K562	blood:	n/a	n/a
15	EP300	chr6:35119975-35120394	K562	blood:	n/a	n/a
16	MAFK	chr6:35120188-35120408	HepG2	liver:	n/a	chr6:35120273-35120288
17	STAT3	chr6:35120197-35120362	MCF10A-Er-Src	breast:	n/a	n/a
18	PBX3	chr6:35120127-35120834	SK-N-SH	brain:	n/a	n/a
19	TAL1	chr6:35120170-35120344	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:35119907..35121608-chr6:35130081..35132531,2	MCF-7	breast:
2	chr6:35119279..35121537-chr6:35147804..35149813,2	K562	blood:
3	chr6:35118855..35121667-chr6:35128574..35130894,2	MCF-7	breast:
4	chr6:35118710..35120443-chr6:35162484..35164592,2	MCF-7	breast:

Variant related genes	Relation type
TCP11	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16872324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1886242	1.00[YRI][hapmap]
rs2057537	1.00[CEU][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2296194	1.00[CEU][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756855	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6457805	1.00[YRI][hapmap]
rs6908059	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940278	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73745098	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745102	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs765063	0.93[ASN][1000 genomes]
rs9348962	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs9348965	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348966	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368849	1.00[YRI][hapmap]
rs9380488	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380491	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs9380492	1.00[CEU][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380493	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs960716	1.00[CEU][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35116800-35121600	Weak transcription	GM12878-XiMat	blood
2	chr6:35116800-35129200	Weak transcription	Aorta	Aorta
3	chr6:35117000-35120400	Weak transcription	A549	lung
4	chr6:35118400-35121200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:35119200-35123600	Enhancers	Osteobl	bone
7	chr6:35119200-35123800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:35119400-35120800	Enhancers	Brain Hippocampus Middle	brain
9	chr6:35119400-35121200	Enhancers	HMEC	breast
10	chr6:35119400-35123800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:35119600-35120400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:35119600-35120400	Enhancers	NH-A	brain
13	chr6:35119600-35121600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:35119800-35120600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr6:35119800-35120600	Enhancers	NHEK	skin
16	chr6:35120000-35120800	Enhancers	Brain Substantia Nigra	brain
17	chr6:35120000-35121200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:35120000-35123000	Enhancers	NHDF-Ad	bronchial
19	chr6:35120000-35123400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:35120200-35120800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:35120200-35120800	Enhancers	Brain Angular Gyrus	brain
22	chr6:35120200-35120800	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links