Variant report

Variant	rs9348966
Chromosome Location	chr6:35113642-35113643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35050024..35051706-chr6:35112716..35114332,2	K562	blood:
2	chr6:35107375..35109588-chr6:35112053..35114587,2	K562	blood:
3	chr6:35111770..35114566-chr6:35142353..35144098,2	MCF-7	breast:
4	chr6:35112797..35115026-chr6:35176369..35178563,2	MCF-7	breast:
5	chr6:35112668..35114586-chr6:35117324..35120218,2	MCF-7	breast:
6	chr6:35113472..35114802-chr6:35172504..35173560,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1034449	1.00[YRI][hapmap]
rs16872324	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16872484	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2057537	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2296194	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3756855	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457803	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6908059	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940278	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73745098	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73745102	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs765063	0.86[ASN][1000 genomes]
rs9348962	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs9348965	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9357194	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380488	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380489	1.00[YRI][hapmap]
rs9380491	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9380492	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380493	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960716	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35104400-35114000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:35108200-35113800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:35108200-35113800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:35108200-35114400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:35108200-35114600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:35109200-35114000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:35110200-35117000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:35110600-35116000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:35110600-35116000	Weak transcription	HSMMtube	muscle
10	chr6:35110800-35116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:35111000-35115800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:35111200-35113800	Weak transcription	NHDF-Ad	bronchial
13	chr6:35111200-35115800	Weak transcription	HSMM	muscle
14	chr6:35111400-35113800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:35111400-35113800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:35111400-35113800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:35111400-35113800	Weak transcription	Osteobl	bone
18	chr6:35111400-35114000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:35111400-35114000	Weak transcription	Fetal Kidney	kidney
20	chr6:35111400-35116000	Weak transcription	A549	lung
21	chr6:35113200-35118600	Enhancers	Fetal Heart	heart
22	chr6:35113400-35115400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:35113400-35116800	Enhancers	Fetal Stomach	stomach
24	chr6:35113600-35114400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:35113600-35114600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:35113600-35114800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:35113600-35115400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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