Variant report

Variant	rs6908059
Chromosome Location	chr6:35109722-35109723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:35109722-35109772	NT2-D1	testis:	n/a
2	chr6:35109722-35109772	HCT-116	colon:	n/a
3	chr6:35109722-35109772	CMK	blood:	n/a
4	chr6:35109722-35109772	ovcar-3	ovarian:	n/a
5	chr6:35109722-35109772	HCM	heart:	n/a
6	chr6:35109722-35109772	GM12891	blood:	n/a
7	chr6:35109722-35109772	RPTEC	kidney:	n/a
8	chr6:35109722-35109772	HIPEpiC	eye:	n/a
9	chr6:35109722-35109772	AG09309	skin:	n/a
10	chr6:35109722-35109772	GM06990	blood:	n/a
11	chr6:35109722-35109772	PANC-1	pancreas:	n/a
12	chr6:35109722-35109772	SK-N-MC	brain:	n/a
13	chr6:35109722-35109772	Hepatocyte	liver:	n/a
14	chr6:35109722-35109772	HNPCEpiC	eye:	n/a
15	chr6:35109722-35109772	AG10803	skin:	n/a
16	chr6:35109722-35109772	K562	blood:	n/a
17	chr6:35109722-35109772	PFSK-1	brain:	n/a
18	chr6:35109722-35109772	HCF	heart:	n/a
19	chr6:35109722-35109772	HCPEpiC	choroid plexus:	n/a
20	chr6:35109722-35109772	Hela-S3	cervix:	n/a
21	chr6:35109722-35109772	HL-60	blood:	n/a
22	chr6:35109722-35109772	SAEC	small airway:	n/a
23	chr6:35109722-35109772	HepG2	liver:	n/a
24	chr6:35109722-35109772	HRPEpiC	eye:	n/a
25	chr6:35109722-35109772	SK-N-SH_RA	brain:	n/a
26	chr6:35109722-35109772	SKMC	muscle:	n/a
27	chr6:35109722-35109772	HRCEpiC	kidney:	n/a
28	chr6:35109722-35109772	GM12878	blood:	n/a
29	chr6:35109722-35109772	BJ	skin:	n/a
30	chr6:35109722-35109772	PrEC	prostate:	n/a
31	chr6:35109722-35109772	HUVEC	blood vessel:	n/a
32	chr6:35109722-35109772	BE2_C	brain:	n/a
33	chr6:35109722-35109772	HEK293	kidney:	embryo
34	chr6:35109722-35109772	NH-A	brain:	n/a
35	chr6:35109722-35109772	Jurkat	blood:	n/a
36	chr6:35109722-35109772	AoSMC	blood vessel:	n/a
37	chr6:35109722-35109772	NB4	blood:	n/a
38	chr6:35109722-35109772	MCF-7	breast:	n/a
39	chr6:35109722-35109772	ProgFib	skin:	n/a
40	chr6:35109722-35109772	MCF10A-Er-Src	breast:	n/a
41	chr6:35109722-35109772	HEEpiC	esophagus:	n/a
42	chr6:35109722-35109772	HMEC	breast:	n/a
43	chr6:35109722-35109772	NHBE	bronchial:	n/a
44	chr6:35109722-35109772	LNCaP	prostate:	n/a
45	chr6:35109722-35109772	GM19239	blood:	n/a
46	chr6:35109722-35109772	SK-N-SH	brain:	n/a
47	chr6:35109722-35109772	A549	lung:	n/a
48	chr6:35109722-35109772	U87	brain:	n/a
49	chr6:35109722-35109772	ECC-1	luminal epithelium:	n/a
50	chr6:35109722-35109772	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
TCP11	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16872324	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16872484	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2057537	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2296194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3756855	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940278	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73745098	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73745102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs765063	0.86[ASN][1000 genomes]
rs9348965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9348966	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380488	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380493	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35104400-35114000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:35106000-35110400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:35106000-35113600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:35106200-35113400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:35107400-35110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:35108000-35109800	Bivalent Enhancer	Fetal Thymus	thymus
7	chr6:35108200-35110200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:35108200-35110200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:35108200-35110200	Weak transcription	Liver	Liver
10	chr6:35108200-35110200	Weak transcription	HSMMtube	muscle
11	chr6:35108200-35110400	Weak transcription	NHDF-Ad	bronchial
12	chr6:35108200-35113600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:35108200-35113800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:35108200-35113800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:35108200-35114400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:35108200-35114600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:35108400-35109800	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:35108400-35110000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr6:35108400-35110200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:35108400-35110200	Weak transcription	Osteobl	bone
21	chr6:35108600-35110400	Weak transcription	HSMM	muscle
22	chr6:35108800-35109800	Enhancers	Primary T cells from cord blood	blood
23	chr6:35109200-35113600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:35109200-35114000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:35109400-35110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:35109400-35110400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:35109400-35110800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:35109400-35110800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:35109400-35111200	Enhancers	Hela-S3	cervix
30	chr6:35109600-35110400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:35109600-35110600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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