Variant report

Variant	rs7772302
Chromosome Location	chr6:35301071-35301072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35298845..35301666-chr6:35464357..35466762,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10080361	0.82[ASN][1000 genomes]
rs10080411	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1013907	0.81[ASN][1000 genomes]
rs10755687	0.94[ASN][1000 genomes]
rs10807150	0.92[ASN][1000 genomes]
rs10947540	0.83[ASN][1000 genomes]
rs10947542	0.87[ASN][1000 genomes]
rs1108709	0.89[ASN][1000 genomes]
rs1194	0.82[ASN][1000 genomes]
rs12211765	0.82[ASN][1000 genomes]
rs12211943	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13197551	0.82[ASN][1000 genomes]
rs13214290	0.81[ASN][1000 genomes]
rs1557567	0.92[ASN][1000 genomes]
rs1557568	0.92[ASN][1000 genomes]
rs1888823	0.82[ASN][1000 genomes]
rs1888824	0.83[ASN][1000 genomes]
rs1888825	0.83[ASN][1000 genomes]
rs1894650	0.83[ASN][1000 genomes]
rs1894651	0.82[ASN][1000 genomes]
rs1929847	0.82[ASN][1000 genomes]
rs1987673	0.89[ASN][1000 genomes]
rs2006184	0.83[ASN][1000 genomes]
rs2071920	0.92[ASN][1000 genomes]
rs2183834	0.81[ASN][1000 genomes]
rs2267657	0.91[ASN][1000 genomes]
rs2267658	0.81[ASN][1000 genomes]
rs2267660	0.81[ASN][1000 genomes]
rs2267661	0.81[ASN][1000 genomes]
rs2267662	0.82[ASN][1000 genomes]
rs2267663	0.83[ASN][1000 genomes]
rs2267664	0.81[ASN][1000 genomes]
rs2284195	0.83[ASN][1000 genomes]
rs2284196	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2395614	0.91[ASN][1000 genomes]
rs2395621	0.92[ASN][1000 genomes]
rs3777742	0.91[ASN][1000 genomes]
rs3777743	0.90[ASN][1000 genomes]
rs3777744	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3798342	0.81[ASN][1000 genomes]
rs3800382	0.81[ASN][1000 genomes]
rs3800385	0.81[ASN][1000 genomes]
rs3800393	0.88[ASN][1000 genomes]
rs3800401	0.84[ASN][1000 genomes]
rs4583983	0.83[ASN][1000 genomes]
rs4711409	0.81[ASN][1000 genomes]
rs4711411	0.83[ASN][1000 genomes]
rs4711414	0.82[ASN][1000 genomes]
rs4713845	0.83[ASN][1000 genomes]
rs4713850	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713853	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58925593	0.81[ASN][1000 genomes]
rs62403575	0.82[ASN][1000 genomes]
rs6457812	0.92[ASN][1000 genomes]
rs6902523	0.82[ASN][1000 genomes]
rs6906987	0.92[ASN][1000 genomes]
rs6907324	0.82[ASN][1000 genomes]
rs6907364	0.93[ASN][1000 genomes]
rs6907573	0.81[ASN][1000 genomes]
rs6913037	0.83[ASN][1000 genomes]
rs6913475	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6920432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6920747	0.82[ASN][1000 genomes]
rs6930562	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6938946	0.86[ASN][1000 genomes]
rs6940375	0.82[ASN][1000 genomes]
rs6941471	0.92[ASN][1000 genomes]
rs7757316	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7758192	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7763946	0.81[ASN][1000 genomes]
rs7769906	0.83[ASN][1000 genomes]
rs7772212	0.82[ASN][1000 genomes]
rs8205	0.92[ASN][1000 genomes]
rs9296144	0.81[ASN][1000 genomes]
rs9348970	0.82[ASN][1000 genomes]
rs9366882	0.92[ASN][1000 genomes]
rs9366883	0.83[ASN][1000 genomes]
rs9366885	0.82[ASN][1000 genomes]
rs9368857	0.81[ASN][1000 genomes]
rs9380497	0.84[ASN][1000 genomes]
rs9380501	0.82[ASN][1000 genomes]
rs9380502	0.81[ASN][1000 genomes]
rs9394283	0.81[ASN][1000 genomes]
rs9394289	0.83[ASN][1000 genomes]
rs9462065	0.89[ASN][1000 genomes]
rs9462072	0.82[ASN][1000 genomes]
rs9469958	0.82[ASN][1000 genomes]
rs9469964	0.81[ASN][1000 genomes]
rs9469972	0.92[ASN][1000 genomes]
rs9469975	0.92[ASN][1000 genomes]
rs9469979	0.81[ASN][1000 genomes]
rs9469982	0.92[ASN][1000 genomes]
rs9469997	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9469998	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs965272	0.92[ASN][1000 genomes]
rs968828	0.89[ASN][1000 genomes]
rs975496	0.82[ASN][1000 genomes]
rs991145	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
2	chr6:35291600-35309600	Weak transcription	Dnd41	blood
3	chr6:35293200-35309600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:35296000-35303000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:35300400-35301200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:35300400-35308800	Weak transcription	Placenta	Placenta
7	chr6:35300600-35302200	Weak transcription	Fetal Thymus	thymus
8	chr6:35300600-35309800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:35300800-35309600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:35300800-35309800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:35301000-35304600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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