Variant report

Variant	rs3823434
Chromosome Location	chr6:35426175-35426176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35419142..35422512-chr6:35424570..35429105,6	MCF-7	breast:
2	chr6:35423795..35426623-chr6:35465037..35468781,3	K562	blood:
3	chr6:35424729..35431814-chr6:35432688..35440099,20	K562	blood:
4	chr6:35417485..35421526-chr6:35423771..35426864,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10947546	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11969686	0.80[ASN][1000 genomes]
rs12173925	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267660	1.00[ASW][hapmap];0.81[GIH][hapmap]
rs45551032	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711413	0.81[GIH][hapmap]
rs4713848	0.81[GIH][hapmap]
rs57253134	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73413796	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9348977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368868	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380507	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
4	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
6	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35421000-35427200	Weak transcription	Thymus	Thymus
2	chr6:35421000-35435400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:35421200-35426200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:35421200-35435200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:35421200-35435400	Weak transcription	Brain Anterior Caudate	brain
6	chr6:35421400-35435400	Weak transcription	Colonic Mucosa	Colon
7	chr6:35421400-35435400	Weak transcription	Fetal Kidney	kidney
8	chr6:35421400-35435400	Weak transcription	Pancreas	Pancrea
9	chr6:35421600-35427200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:35421600-35433800	Weak transcription	HUVEC	blood vessel
11	chr6:35421600-35435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:35421600-35435200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:35421600-35435400	Weak transcription	A549	lung
14	chr6:35421600-35435400	Weak transcription	NH-A	brain
15	chr6:35421800-35431000	Weak transcription	Liver	Liver
16	chr6:35422000-35427000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:35422000-35430200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:35422200-35435200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:35422200-35435400	Weak transcription	Small Intestine	intestine
20	chr6:35422400-35427000	Weak transcription	GM12878-XiMat	blood
21	chr6:35422400-35430200	Weak transcription	HSMM	muscle
22	chr6:35422400-35434800	Strong transcription	Fetal Intestine Small	intestine
23	chr6:35422600-35427600	Strong transcription	HepG2	liver
24	chr6:35422600-35429200	Strong transcription	Dnd41	blood
25	chr6:35422600-35435400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:35422800-35426800	Weak transcription	Osteobl	bone
27	chr6:35422800-35427000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:35422800-35427000	Weak transcription	HSMMtube	muscle
29	chr6:35422800-35427200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:35422800-35431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:35422800-35434800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:35422800-35434800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:35422800-35435200	Weak transcription	Fetal Thymus	thymus
34	chr6:35422800-35435400	Weak transcription	Fetal Brain Male	brain
35	chr6:35422800-35435600	Weak transcription	Right Atrium	heart
36	chr6:35423000-35427200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:35423000-35428400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:35423000-35428600	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:35423000-35435200	Weak transcription	Fetal Heart	heart
40	chr6:35423000-35435200	Strong transcription	Fetal Stomach	stomach
41	chr6:35423000-35435400	Weak transcription	NHDF-Ad	bronchial
42	chr6:35423200-35427200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:35423200-35429200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:35423200-35432200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:35423200-35435200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:35423400-35426800	Strong transcription	Fetal Muscle Leg	muscle
47	chr6:35423400-35427200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:35423400-35428000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr6:35423400-35428000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr6:35423400-35428000	Strong transcription	Gastric	stomach

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