Variant report

Variant	rs1408255
Chromosome Location	chr6:35135714-35135715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35114684..35117968-chr6:35132724..35136247,4	MCF-7	breast:
2	chr6:35134997..35137568-chr6:35225872..35228081,2	MCF-7	breast:
3	chr6:35133862..35136127-chr6:35165678..35167880,2	MCF-7	breast:
4	chr6:35131417..35136766-chr6:35169545..35174762,6	MCF-7	breast:
5	chr6:35134254..35136193-chr6:35463706..35465770,2	MCF-7	breast:
6	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
7	chr6:35134724..35136511-chr6:35174942..35176487,2	K562	blood:
8	chr6:35126225..35131731-chr6:35132022..35136988,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction
ENSG00000124678	Chromatin interaction
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs3800403	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800404	0.82[ASN][1000 genomes]
rs3800405	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711405	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4711407	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457801	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6457802	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6457804	0.92[ASN][1000 genomes]
rs6457806	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911268	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914081	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925406	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6931790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6939132	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380494	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380495	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394277	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs942374	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs942375	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3340708	chr6:35135274-35139572	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35128600-35137400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35128800-35137400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:35130200-35136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:35130600-35141400	Weak transcription	Brain Substantia Nigra	brain
5	chr6:35130800-35136200	Weak transcription	Left Ventricle	heart
6	chr6:35131000-35137400	Weak transcription	Lung	lung
7	chr6:35133600-35136000	Weak transcription	Fetal Kidney	kidney
8	chr6:35134000-35137400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:35134200-35136600	Weak transcription	Fetal Stomach	stomach
10	chr6:35134200-35137400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:35134200-35137400	Weak transcription	NH-A	brain
12	chr6:35134400-35137200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:35134400-35137400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:35134400-35137400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:35134400-35137400	Weak transcription	Osteobl	bone
16	chr6:35134400-35137600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:35134400-35140400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:35134600-35136000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:35134600-35136000	Weak transcription	Fetal Lung	lung
20	chr6:35134600-35136600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:35134600-35136600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:35134600-35137400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:35134600-35137400	Weak transcription	NHDF-Ad	bronchial
24	chr6:35134600-35137800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:35134800-35137400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:35134800-35137400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:35135000-35137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:35135000-35137400	Weak transcription	Gastric	stomach
29	chr6:35135000-35148800	Weak transcription	Esophagus	oesophagus
30	chr6:35135600-35138600	Weak transcription	Stomach Mucosa	stomach

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