Variant report

Variant	rs72537461
Chromosome Location	chr6:35039189-35039190
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35032635..35034931-chr6:35037985..35040100,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1093985	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191889	0.86[ASN][1000 genomes]
rs1568705	0.93[ASN][1000 genomes]
rs2049316	0.81[ASN][1000 genomes]
rs2762341	0.81[EUR][1000 genomes]
rs2820224	0.88[ASN][1000 genomes]
rs2820230	0.93[ASN][1000 genomes]
rs3800424	0.80[ASN][1000 genomes]
rs3800426	0.93[ASN][1000 genomes]
rs3823437	0.80[ASN][1000 genomes]
rs6937805	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs707967	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs707968	0.81[EUR][1000 genomes]
rs820068	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820073	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820074	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820075	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820076	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820077	0.81[AFR][1000 genomes]
rs820078	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820079	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820080	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820081	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820084	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820086	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820087	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820088	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820089	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820091	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs820092	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs820094	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820096	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820097	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820098	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs865353	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9469933	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv965716	chr6:35036952-35039725	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35015800-35044200	Weak transcription	HMEC	breast
2	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
3	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
4	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
5	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
8	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:35021800-35055400	Weak transcription	HSMM	muscle
10	chr6:35024000-35039200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:35024800-35062000	Weak transcription	A549	lung
12	chr6:35025600-35056000	Strong transcription	Liver	Liver
13	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:35028400-35048800	Weak transcription	Psoas Muscle	Psoas
15	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:35028800-35045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:35029000-35046200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:35029000-35050800	Weak transcription	NHLF	lung
19	chr6:35029200-35039800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:35029200-35045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:35029200-35046400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:35029400-35045200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:35029400-35046200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
25	chr6:35029800-35051200	Weak transcription	Osteobl	bone
26	chr6:35030000-35047400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:35030600-35040600	Weak transcription	NHEK	skin
28	chr6:35030600-35045000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:35030600-35045000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:35031600-35040000	Weak transcription	HUVEC	blood vessel
31	chr6:35031600-35045000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:35032200-35040200	Weak transcription	Fetal Brain Female	brain
33	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:35033000-35050200	Weak transcription	Dnd41	blood
35	chr6:35033200-35046000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:35033400-35039600	Strong transcription	Lung	lung
37	chr6:35033800-35039400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr6:35034400-35046200	Weak transcription	Fetal Thymus	thymus
39	chr6:35034600-35048200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:35034800-35039200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:35034800-35039200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:35034800-35045800	Weak transcription	Brain Angular Gyrus	brain
43	chr6:35035000-35039400	Weak transcription	Aorta	Aorta
44	chr6:35035000-35040200	Weak transcription	Brain Anterior Caudate	brain
45	chr6:35035000-35045000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:35035200-35044800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:35035200-35045200	Weak transcription	Brain Germinal Matrix	brain
48	chr6:35035400-35039200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:35035400-35039200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:35035400-35039200	Weak transcription	Thymus	Thymus

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