Variant report

Variant	rs3781723
Chromosome Location	chr11:74895213-74895214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74884999..74887214-chr11:74893801..74896060,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11236366	0.83[CHD][hapmap]
rs17133818	1.00[CEU][hapmap]
rs3781727	1.00[CEU][hapmap]
rs3824903	0.83[MKK][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054122	chr11:74872792-74895241	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
2	chr11:74870800-74901600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:74876200-74906200	Weak transcription	Spleen	Spleen
4	chr11:74880800-74911000	Weak transcription	Gastric	stomach
5	chr11:74881200-74905600	Weak transcription	Pancreas	Pancrea
6	chr11:74881600-74916000	Weak transcription	Small Intestine	intestine
7	chr11:74884800-74898200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:74886600-74901600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:74887000-74902800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:74887200-74901200	Weak transcription	Right Atrium	heart
11	chr11:74890200-74895600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:74890800-74899800	Strong transcription	Fetal Intestine Small	intestine
13	chr11:74892200-74896000	Strong transcription	Liver	Liver
14	chr11:74892600-74914200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr11:74892800-74896800	Strong transcription	Fetal Intestine Large	intestine
16	chr11:74893200-74902000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:74893400-74901200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:74893400-74901400	Weak transcription	Left Ventricle	heart
19	chr11:74894000-74895600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:74894000-74895600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:74894000-74895600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:74894000-74899000	Weak transcription	Adipose Nuclei	Adipose
23	chr11:74894000-74899200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:74894000-74901600	Weak transcription	Right Ventricle	heart
25	chr11:74894400-74896000	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:74894400-74896000	Enhancers	HepG2	liver
27	chr11:74894400-74896400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:74894600-74896200	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:74894600-74904200	Enhancers	Placenta	Placenta
30	chr11:74894800-74897400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:74895000-74895800	Strong transcription	Lung	lung
32	chr11:74895000-74896400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:74895000-74896600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:74895000-74896600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:74895200-74895600	Weak transcription	Colonic Mucosa	Colon
36	chr11:74895200-74896600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:74895200-74898200	Weak transcription	Rectal Mucosa Donor 29	rectum

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