Variant report

Variant	rs3782983
Chromosome Location	chr13:98000888-98000889
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97992598..97996850-chr13:97999522..98001186,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1463790	0.96[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1553012	0.82[CHB][hapmap]
rs1553013	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1973419	0.89[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs2011452	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2291785	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4771270	0.91[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.82[AMR][1000 genomes]
rs6491350	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7318250	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320865	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs7338689	0.96[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7995199	0.83[AMR][1000 genomes]
rs9513235	0.83[AMR][1000 genomes]
rs9513237	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516902	0.89[ASW][hapmap]
rs9516907	0.83[AMR][1000 genomes]
rs9516914	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9556701	0.82[CHB][hapmap]
rs9556702	0.87[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9556706	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97982000-98002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr13:97986200-98003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:97991400-98002600	Weak transcription	Fetal Brain Female	brain
6	chr13:97991600-98020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr13:97991800-98001000	Weak transcription	Fetal Brain Male	brain
8	chr13:97992000-98006200	Weak transcription	Psoas Muscle	Psoas
9	chr13:97992800-98001000	Weak transcription	HSMM	muscle
10	chr13:97992800-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr13:97994200-98016200	Weak transcription	NHDF-Ad	bronchial
12	chr13:97995000-98007400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr13:97995200-98007400	Strong transcription	Primary T cells from cord blood	blood
14	chr13:97995200-98007800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr13:97995200-98011000	Strong transcription	Placenta	Placenta
16	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
17	chr13:97995600-98005600	Strong transcription	Hela-S3	cervix
18	chr13:97996200-98019400	Weak transcription	GM12878-XiMat	blood
19	chr13:97996400-98003000	Weak transcription	Brain Germinal Matrix	brain
20	chr13:97996800-98003600	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr13:97997200-98002000	Weak transcription	Fetal Heart	heart
22	chr13:97997400-98001800	Weak transcription	Colon Smooth Muscle	Colon
23	chr13:97997400-98002000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr13:97997400-98002800	Strong transcription	Fetal Lung	lung
25	chr13:97997400-98006400	Weak transcription	HMEC	breast
26	chr13:97997400-98007800	Strong transcription	Adipose Nuclei	Adipose
27	chr13:97997400-98011600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr13:97997400-98019000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr13:97997600-98008400	Weak transcription	K562	blood
30	chr13:97998200-98002600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:97998200-98003600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:97998400-98001000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr13:97998400-98003200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr13:97998400-98007400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr13:97998400-98015800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr13:97998600-98001600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:97998600-98002600	Strong transcription	HepG2	liver
38	chr13:97998600-98002800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr13:97998600-98004600	Strong transcription	Brain Anterior Caudate	brain
40	chr13:97998600-98005000	Strong transcription	HUVEC	blood vessel
41	chr13:97998600-98006600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr13:97998600-98006600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr13:97998600-98007400	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr13:97998600-98007600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr13:97998800-98002000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr13:97998800-98002200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr13:97998800-98002200	Strong transcription	Fetal Intestine Small	intestine
48	chr13:97998800-98002400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr13:97998800-98002400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr13:97998800-98002400	Strong transcription	Fetal Stomach	stomach

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