Variant report

Variant	rs9513235
Chromosome Location	chr13:97971795-97971796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97964833..97966698-chr13:97969721..97972103,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1463790	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1553013	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1973419	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2011452	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2291785	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3782983	0.83[AMR][1000 genomes]
rs4771270	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61974439	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7320865	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7338689	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7995199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949741	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9513237	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9516902	0.85[AMR][1000 genomes]
rs9516907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516914	0.83[AMR][1000 genomes]
rs9556702	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9556706	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
3	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
7	chr13:97961000-97973800	Weak transcription	NHEK	skin
8	chr13:97961400-97975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:97961400-97987200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:97961600-97975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:97961800-97975200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:97961800-97977600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:97961800-97978000	Weak transcription	HMEC	breast
14	chr13:97962000-97979200	Weak transcription	HUVEC	blood vessel
15	chr13:97962000-97991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr13:97962400-97978200	Weak transcription	K562	blood
17	chr13:97963000-97972600	Enhancers	Brain Substantia Nigra	brain
18	chr13:97963000-97984400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:97963600-97977000	Weak transcription	Hela-S3	cervix
20	chr13:97965000-97972600	Enhancers	Brain Hippocampus Middle	brain
21	chr13:97965200-97985800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr13:97965600-97988800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr13:97965800-97987200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr13:97967000-97980400	Weak transcription	Fetal Thymus	thymus
25	chr13:97967400-97972600	Enhancers	Colon Smooth Muscle	Colon
26	chr13:97967400-97991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:97967600-97972600	Enhancers	Brain Cingulate Gyrus	brain
28	chr13:97968000-97972000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr13:97968000-97972600	Enhancers	Brain Anterior Caudate	brain
30	chr13:97968200-97972600	Enhancers	Fetal Muscle Leg	muscle
31	chr13:97968400-97971800	Genic enhancers	Fetal Stomach	stomach
32	chr13:97969200-97972000	Enhancers	Fetal Lung	lung
33	chr13:97969200-97972000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr13:97969200-97979200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:97969400-97972200	Enhancers	Brain Angular Gyrus	brain
36	chr13:97969400-97981600	Weak transcription	Spleen	Spleen
37	chr13:97969400-97981800	Weak transcription	Esophagus	oesophagus
38	chr13:97969600-97982000	Weak transcription	Primary B cells from cord blood	blood
39	chr13:97969600-97987200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr13:97969800-97986600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr13:97970200-97972000	Enhancers	Stomach Smooth Muscle	stomach
42	chr13:97970200-97972200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr13:97970200-97972200	Enhancers	NHLF	lung
44	chr13:97970400-97971800	Enhancers	Fetal Kidney	kidney
45	chr13:97970400-97971800	Enhancers	Psoas Muscle	Psoas
46	chr13:97970400-97971800	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr13:97970400-97971800	Enhancers	Small Intestine	intestine
48	chr13:97970400-97972200	Enhancers	A549	lung
49	chr13:97970600-97971800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr13:97970600-97972000	Enhancers	Duodenum Smooth Muscle	Duodenum

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