Variant report

Variant	rs9556706
Chromosome Location	chr13:97991808-97991809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97887496..97890340-chr13:97991017..97992548,2	K562	blood:
2	chr13:97985220..97987596-chr13:97990645..97993198,3	K562	blood:
3	chr13:97990074..97993792-chr13:97995202..97997609,3	K562	blood:
4	chr13:97907616..97910279-chr13:97990865..97992598,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1463790	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1553013	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1973419	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2011452	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291785	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3782983	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4771270	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56323958	0.83[ASN][1000 genomes]
rs61974439	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6491350	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7318250	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7320865	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7338689	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7995199	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs949741	0.87[AMR][1000 genomes]
rs9513235	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9513237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516902	0.85[AMR][1000 genomes]
rs9516907	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9516914	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9556702	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3398856	chr13:97990623-97992426	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
2	chr13:97981000-97998800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:97982000-98002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:97984000-98000800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr13:97984400-97992400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr13:97985600-97992800	Strong transcription	HepG2	liver
9	chr13:97985800-97992000	Strong transcription	Primary B cells from cord blood	blood
10	chr13:97986200-98003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr13:97986400-97992000	Strong transcription	Primary T cells from cord blood	blood
12	chr13:97986400-97992400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr13:97986600-97998400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr13:97988000-97992200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:97988200-97992200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:97989200-97999000	Weak transcription	Colonic Mucosa	Colon
17	chr13:97989400-97993200	Genic enhancers	Liver	Liver
18	chr13:97989400-97996600	Weak transcription	Fetal Thymus	thymus
19	chr13:97989400-97999200	Weak transcription	NH-A	brain
20	chr13:97989600-97998600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr13:97989600-97999400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr13:97989800-97995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:97990000-97993000	Weak transcription	Hela-S3	cervix
24	chr13:97990000-97995600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:97990000-97998600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr13:97990400-97992000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr13:97990400-97992000	Genic enhancers	Pancreas	Pancrea
28	chr13:97990400-97992000	Enhancers	Psoas Muscle	Psoas
29	chr13:97990400-97992400	Genic enhancers	Lung	lung
30	chr13:97990400-97992600	Enhancers	Right Atrium	heart
31	chr13:97990600-97994600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr13:97990800-97992000	Genic enhancers	Fetal Stomach	stomach
33	chr13:97990800-97992200	Enhancers	Aorta	Aorta
34	chr13:97990800-97992600	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr13:97991000-97992400	Enhancers	Colon Smooth Muscle	Colon
36	chr13:97991000-97995200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:97991000-97995200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr13:97991000-97995200	Weak transcription	Placenta	Placenta
39	chr13:97991200-97992000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr13:97991200-97992000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr13:97991200-97992000	Genic enhancers	K562	blood
42	chr13:97991200-97992200	Enhancers	Ovary	ovary
43	chr13:97991200-97992400	Enhancers	Left Ventricle	heart
44	chr13:97991200-97992600	Flanking Active TSS	NHDF-Ad	bronchial
45	chr13:97991200-97995200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:97991200-97998800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:97991400-97992000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:97991400-97992000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:97991400-97992000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr13:97991400-97992000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum

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