Variant report

Variant	rs3784111
Chromosome Location	chr14:68790936-68790937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10131654	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10144669	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11621881	0.83[ASN][1000 genomes]
rs1956523	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1956525	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1956526	0.86[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs28456296	0.98[EUR][1000 genomes]
rs3784106	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3784110	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4410007	0.86[ASN][1000 genomes]
rs4899234	1.00[CEU][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs4899238	0.86[ASN][1000 genomes]
rs62635808	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7144422	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7146110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148412	0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7149396	0.89[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7493547	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs8013078	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs8013968	0.84[ASN][1000 genomes]
rs8022860	0.86[ASN][1000 genomes]
rs911255	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs911258	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9989152	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68777000-68792200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:68777000-68793400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68783400-68793600	Weak transcription	Pancreas	Pancrea
5	chr14:68785600-68793600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:68786600-68795200	Weak transcription	Aorta	Aorta
8	chr14:68786600-68799000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:68786800-68798800	Weak transcription	Brain Anterior Caudate	brain
10	chr14:68787000-68792400	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68787400-68798400	Weak transcription	Fetal Stomach	stomach
12	chr14:68787600-68795200	Weak transcription	Spleen	Spleen
13	chr14:68787800-68791800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:68788000-68791400	Weak transcription	Primary B cells from cord blood	blood
15	chr14:68788200-68791400	Weak transcription	GM12878-XiMat	blood
16	chr14:68788200-68793600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:68788400-68796600	Weak transcription	Fetal Lung	lung
19	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:68789800-68791000	Weak transcription	Gastric	stomach
21	chr14:68790200-68795600	Weak transcription	Psoas Muscle	Psoas
22	chr14:68790400-68795400	Enhancers	Primary B cells from peripheral blood	blood
23	chr14:68790800-68799200	Weak transcription	Fetal Muscle Leg	muscle

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