Variant report

Variant	rs8013078
Chromosome Location	chr14:68784899-68784900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68780053..68783050-chr14:68784750..68787033,2	MCF-7	breast:
2	chr14:68783910..68786453-chr14:69257725..69259956,2	MCF-7	breast:
3	chr14:68783421..68786045-chr14:68786498..68788338,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10083393	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10131654	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10135678	0.98[EUR][1000 genomes]
rs10136039	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10144669	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11621881	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12878858	0.80[CHB][hapmap]
rs1956523	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1956525	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1956526	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2064914	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2145422	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs2145423	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs3784106	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784110	0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3784111	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3825730	0.80[CHB][hapmap]
rs4410007	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4899238	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902566	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62635808	0.86[ASN][1000 genomes]
rs7144422	0.87[ASN][1000 genomes]
rs7146110	0.84[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7147852	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs7148073	0.80[CHB][hapmap]
rs7148322	0.95[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7148412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7149396	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7151629	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[EUR][1000 genomes]
rs7493547	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8013968	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8022860	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911255	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs911258	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927220	0.95[CEU][hapmap];0.93[YRI][hapmap];0.97[EUR][1000 genomes]
rs9323506	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9989152	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68772000-68788400	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:68772600-68788000	Weak transcription	Lung	lung
4	chr14:68774400-68785200	Weak transcription	Psoas Muscle	Psoas
5	chr14:68776200-68789400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:68776400-68785400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:68777000-68785800	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:68777000-68792200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:68777000-68793400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:68777800-68785400	Weak transcription	Fetal Kidney	kidney
11	chr14:68779000-68787400	Weak transcription	Primary T cells from cord blood	blood
12	chr14:68780400-68785200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:68780400-68785200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr14:68780400-68785400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:68780600-68785200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:68780800-68787600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:68781000-68786200	Weak transcription	Fetal Stomach	stomach
18	chr14:68781200-68785800	Weak transcription	Brain Anterior Caudate	brain
19	chr14:68781200-68786800	Weak transcription	Spleen	Spleen
20	chr14:68781200-68789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:68781400-68785200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:68781400-68785400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:68781600-68786200	Weak transcription	Brain Substantia Nigra	brain
24	chr14:68781600-68787600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:68782000-68785400	Weak transcription	Primary B cells from cord blood	blood
26	chr14:68782000-68788200	Enhancers	GM12878-XiMat	blood
27	chr14:68782200-68785200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:68782200-68785400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr14:68782200-68785400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr14:68782200-68786600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:68782200-68786600	Weak transcription	Fetal Muscle Leg	muscle
32	chr14:68783200-68785200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:68783200-68785200	Weak transcription	Fetal Lung	lung
34	chr14:68783400-68787400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:68783400-68793600	Weak transcription	Pancreas	Pancrea
36	chr14:68783600-68785000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:68784200-68786400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:68784400-68789200	Weak transcription	HepG2	liver
39	chr14:68784800-68785800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr14:68784800-68786000	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr14:68784800-68787600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr14:68784800-68788200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links