Variant report

Variant	rs10136039
Chromosome Location	chr14:68769710-68769711
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68765970..68770223-chr14:69260401..69262573,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10083393	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10131654	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10135678	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10144669	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11621881	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1956523	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2064914	0.94[EUR][1000 genomes]
rs2145422	0.92[ASN][1000 genomes]
rs2145423	0.92[ASN][1000 genomes]
rs3784106	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4410007	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4899238	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4902566	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7147852	0.92[ASN][1000 genomes]
rs7148322	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148412	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7149396	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151629	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7493547	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8013078	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8013968	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8022860	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs911255	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs911258	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs927220	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9323506	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9989152	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68760400-68776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68760600-68773600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:68762000-68773400	Weak transcription	Small Intestine	intestine
4	chr14:68762800-68771400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:68763400-68772400	Weak transcription	Pancreas	Pancrea
6	chr14:68765000-68774600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68765200-68771000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:68767600-68776400	Weak transcription	Left Ventricle	heart
9	chr14:68768000-68771000	Weak transcription	Fetal Heart	heart
10	chr14:68768200-68772600	Weak transcription	Ovary	ovary
11	chr14:68768800-68770000	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr14:68769000-68773400	Weak transcription	Aorta	Aorta
13	chr14:68769000-68776400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:68769200-68771000	Weak transcription	Fetal Lung	lung
16	chr14:68769200-68771800	Weak transcription	Primary B cells from cord blood	blood
17	chr14:68769200-68773400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:68769200-68774000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:68769200-68774200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:68769400-68772600	Weak transcription	Fetal Thymus	thymus

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