Variant report

Variant	rs7148322
Chromosome Location	chr14:68768719-68768720
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68767111..68768962-chr14:69260307..69262756,4	MCF-7	breast:
2	chr14:68714804..68718493-chr14:68766094..68768941,3	MCF-7	breast:
3	chr14:68764415..68769564-chr14:68770855..68774967,6	MCF-7	breast:
4	chr14:68765970..68770223-chr14:69260401..69262573,5	MCF-7	breast:
5	chr14:68760897..68764007-chr14:68767297..68769142,3	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10083393	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10131654	0.95[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10135678	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10136039	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10144669	0.90[CEU][hapmap];0.86[JPT][hapmap];0.97[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11621881	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1956523	0.95[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1956524	0.82[CHB][hapmap]
rs1956525	0.87[JPT][hapmap]
rs1956526	0.86[JPT][hapmap]
rs2064914	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2145422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2145423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3784106	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4410007	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4899238	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4902566	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7148412	0.95[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7149396	0.80[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7151629	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7493547	0.95[CEU][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8013078	0.95[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8013968	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8022860	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs911255	0.95[CEU][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs911258	0.95[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs927220	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9323506	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9989152	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68752400-68768800	Weak transcription	Aorta	Aorta
2	chr14:68753400-68768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:68753600-68768800	Weak transcription	Dnd41	blood
4	chr14:68760000-68768800	Weak transcription	Thymus	Thymus
5	chr14:68760400-68768800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:68760400-68776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:68760600-68773600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:68762000-68773400	Weak transcription	Small Intestine	intestine
9	chr14:68762800-68768800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:68762800-68771400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:68763000-68768800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:68763400-68772400	Weak transcription	Pancreas	Pancrea
13	chr14:68763800-68768800	Weak transcription	Primary B cells from cord blood	blood
14	chr14:68765000-68774600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:68765200-68771000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr14:68765600-68768800	Weak transcription	Fetal Muscle Leg	muscle
17	chr14:68767600-68776400	Weak transcription	Left Ventricle	heart
18	chr14:68768000-68771000	Weak transcription	Fetal Heart	heart
19	chr14:68768200-68772600	Weak transcription	Ovary	ovary
20	chr14:68768400-68768800	Weak transcription	Fetal Lung	lung
21	chr14:68768400-68769200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:68768400-68769400	ZNF genes & repeats	Fetal Thymus	thymus
23	chr14:68768600-68769000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr14:68768600-68769000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:68768600-68769000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:68768600-68769200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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