Variant report

Variant	rs10144669
Chromosome Location	chr14:68810876-68810877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68797384..68800129-chr14:68809250..68811315,3	MCF-7	breast:
2	chr14:68808236..68811175-chr14:68815933..68818264,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10083393	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10131654	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10135678	0.97[EUR][1000 genomes]
rs10136039	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10483807	0.83[CHB][hapmap]
rs11158730	0.83[CHB][hapmap]
rs11621881	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12880109	0.83[CHB][hapmap]
rs1956523	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1956525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1956526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2064914	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2145422	0.87[JPT][hapmap]
rs2145423	0.86[JPT][hapmap]
rs3784106	0.95[CEU][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3784110	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs3784111	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4410007	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4899238	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902566	0.95[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62635808	0.84[ASN][1000 genomes]
rs7144422	0.86[ASN][1000 genomes]
rs7146110	0.80[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7147852	0.86[JPT][hapmap]
rs7148322	0.90[CEU][hapmap];0.86[JPT][hapmap];0.97[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7148412	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149396	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151629	0.95[CEU][hapmap];0.96[YRI][hapmap];0.96[EUR][1000 genomes]
rs7493547	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8013078	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8013968	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8022860	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs911254	0.83[CHB][hapmap]
rs911255	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs911258	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs927220	0.90[CEU][hapmap];0.96[YRI][hapmap];0.96[EUR][1000 genomes]
rs9323506	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9989152	0.95[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:68804000-68813400	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:68804400-68812800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:68806200-68811200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:68806400-68811000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:68807000-68811000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:68807000-68811000	Enhancers	Primary B cells from peripheral blood	blood
8	chr14:68807600-68811000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr14:68808200-68811000	Enhancers	Primary T cells from cord blood	blood
10	chr14:68808200-68811000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr14:68808200-68811200	Enhancers	Fetal Thymus	thymus
12	chr14:68808600-68812200	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:68808600-68819200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:68808800-68811000	Enhancers	Thymus	Thymus
15	chr14:68808800-68812200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:68808800-68813000	Weak transcription	Brain Anterior Caudate	brain
17	chr14:68808800-68813000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:68809000-68816400	Weak transcription	Fetal Intestine Large	intestine
19	chr14:68809200-68811000	Enhancers	GM12878-XiMat	blood
20	chr14:68809200-68812000	Weak transcription	Fetal Intestine Small	intestine
21	chr14:68809200-68812200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:68809200-68813200	Weak transcription	Small Intestine	intestine
23	chr14:68809400-68812400	Weak transcription	Fetal Stomach	stomach
24	chr14:68809400-68813200	Weak transcription	Primary B cells from cord blood	blood
25	chr14:68809800-68811000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr14:68810000-68811000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr14:68810200-68811000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr14:68810400-68811000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr14:68810400-68811000	Enhancers	Primary T cells fromperipheralblood	blood
30	chr14:68810400-68811000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr14:68810400-68811200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr14:68810600-68811000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr14:68810600-68813000	Weak transcription	Fetal Lung	lung
34	chr14:68810800-68813000	Weak transcription	Brain Hippocampus Middle	brain

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