Variant report

Variant	rs3788488
Chromosome Location	chr22:33127481-33127482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2008206	0.83[JPT][hapmap]
rs2157135	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2413145	0.83[JPT][hapmap]
rs2413146	0.83[JPT][hapmap]
rs3788489	0.83[JPT][hapmap]
rs3788490	0.83[JPT][hapmap]
rs3788491	0.83[JPT][hapmap]
rs3788493	0.83[JPT][hapmap]
rs3788494	0.83[JPT][hapmap]
rs3788495	0.83[JPT][hapmap]
rs3788496	0.83[JPT][hapmap]
rs3788497	0.83[JPT][hapmap]
rs3827340	0.83[JPT][hapmap]
rs4339044	0.90[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5998605	0.83[JPT][hapmap]
rs5998607	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs732446	1.00[LWK][hapmap];0.85[MEX][hapmap];0.81[AFR][1000 genomes]
rs743739	0.83[JPT][hapmap]
rs762885	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv588897	chr22:33116314-33139230	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33120000-33129600	Weak transcription	Right Atrium	heart
2	chr22:33121600-33127800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:33121800-33141400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33126800-33128200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr22:33127000-33128000	Enhancers	Spleen	Spleen
6	chr22:33127200-33127600	Enhancers	Fetal Thymus	thymus
7	chr22:33127400-33127600	Enhancers	Thymus	Thymus
8	chr22:33127400-33127800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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