Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16990831	1.00[ASW][hapmap]
rs2008206	0.83[JPT][hapmap]
rs2157135	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2413145	0.83[JPT][hapmap]
rs2413146	0.83[JPT][hapmap]
rs2858344	1.00[ASW][hapmap]
rs3788488	0.90[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3788489	0.83[JPT][hapmap]
rs3788490	0.83[JPT][hapmap]
rs3788491	0.83[JPT][hapmap]
rs3788493	0.83[JPT][hapmap]
rs3788494	0.83[JPT][hapmap]
rs3788495	0.83[JPT][hapmap]
rs3788496	0.83[JPT][hapmap]
rs3788497	0.83[JPT][hapmap]
rs3827340	0.83[JPT][hapmap]
rs5998605	0.83[JPT][hapmap]
rs5998607	0.83[JPT][hapmap]
rs732446	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs743739	0.83[JPT][hapmap]
rs762885	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv588897	chr22:33116314-33139230	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33121800-33141400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33127800-33133000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:33127800-33133200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr22:33128400-33135000	Enhancers	Fetal Thymus	thymus
5	chr22:33130600-33133800	Weak transcription	Spleen	Spleen
6	chr22:33130800-33134600	Enhancers	HepG2	liver
7	chr22:33131800-33133200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:33132000-33133800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr22:33132000-33134200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr22:33132000-33134200	Weak transcription	Placenta	Placenta
11	chr22:33132000-33140600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr22:33132600-33133200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr22:33132600-33134600	Enhancers	Thymus	Thymus
14	chr22:33132800-33133200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr22:33132800-33133400	Enhancers	HSMMtube	muscle

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