Variant report

Variant	rs732446
Chromosome Location	chr22:33135768-33135769
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16990831	1.00[ASW][hapmap]
rs2858344	1.00[ASW][hapmap]
rs3788488	1.00[LWK][hapmap];0.85[MEX][hapmap];0.81[AFR][1000 genomes]
rs4339044	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv588897	chr22:33116314-33139230	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs732446	EMID1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33121800-33141400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33132000-33140600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:33134200-33140200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr22:33134400-33139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr22:33134600-33138400	Weak transcription	HepG2	liver
6	chr22:33134600-33141200	Weak transcription	Spleen	Spleen
7	chr22:33134600-33141800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr22:33134800-33140000	Weak transcription	Placenta	Placenta
9	chr22:33135000-33139800	Weak transcription	Fetal Thymus	thymus
10	chr22:33135600-33138400	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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