Variant report

Variant	rs3791703
Chromosome Location	chr2:212284353-212284354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11900036	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16846100	0.83[GIH][hapmap]
rs16846127	0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs16846128	0.81[CEU][hapmap];0.81[CHB][hapmap];0.88[EUR][1000 genomes]
rs16846133	0.81[EUR][1000 genomes]
rs16846136	0.83[GIH][hapmap]
rs1836717	0.82[JPT][hapmap]
rs1836718	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2289086	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791682	0.89[MEX][hapmap]
rs3791697	0.81[EUR][1000 genomes]
rs3791702	0.83[CEU][hapmap]
rs3791704	0.91[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes]
rs3791705	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3791706	0.89[EUR][1000 genomes]
rs3791707	0.80[CEU][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs3791708	0.84[CEU][hapmap];0.82[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs3791709	0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs3791710	0.81[CHB][hapmap]
rs4673613	0.88[CEU][hapmap]
rs4673614	0.84[CEU][hapmap]
rs4673616	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs59043430	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6742399	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv875777	chr2:212274937-212295875	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212279400-212294600	Weak transcription	Fetal Heart	heart
2	chr2:212281600-212301200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:212283200-212289000	Weak transcription	Brain Angular Gyrus	brain
4	chr2:212283600-212286800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:212283800-212286800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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