Variant report

Variant	rs3791710
Chromosome Location	chr2:212290048-212290049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212288710..212290756-chr2:212380740..212383126,2	MCF-7	breast:
2	chr2:212286106..212287792-chr2:212289650..212291629,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11900036	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs16825005	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs16825008	0.82[JPT][hapmap]
rs16846100	0.90[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs16846127	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs16846128	0.95[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs16846133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs16846136	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs16846140	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1836716	0.94[ASN][1000 genomes]
rs1836717	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1836718	0.86[CHB][hapmap]
rs2033647	0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs3791702	1.00[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs3791703	0.81[CHB][hapmap]
rs3791704	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs3791706	0.94[ASN][1000 genomes]
rs3791707	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs3791708	0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs3791709	0.95[CHB][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4673616	0.95[CHB][hapmap];0.96[JPT][hapmap];0.94[ASN][1000 genomes]
rs4673617	0.96[ASN][1000 genomes]
rs55901919	0.98[ASN][1000 genomes]
rs62178762	0.86[ASN][1000 genomes]
rs6435622	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs73985439	0.89[ASN][1000 genomes]
rs7591494	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv875777	chr2:212274937-212295875	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv818108	chr2:212289728-212292699	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212279400-212294600	Weak transcription	Fetal Heart	heart
2	chr2:212281600-212301200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:212287000-212295400	Weak transcription	HUVEC	blood vessel
4	chr2:212288200-212292800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:212288200-212302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links