Variant report

Variant	rs16825005
Chromosome Location	chr2:212304565-212304566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212300211..212302596-chr2:212303627..212305384,3	MCF-7	breast:
2	chr2:212138119..212140706-chr2:212301940..212304830,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16825008	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16846100	0.80[CHB][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs16846133	0.80[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap]
rs16846136	0.80[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.91[LWK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs16846140	0.80[CHB][hapmap];0.87[CHD][hapmap]
rs1836717	0.80[CHB][hapmap];0.87[CHD][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap]
rs2033646	0.82[MEX][hapmap]
rs2033647	0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs3791696	1.00[YRI][hapmap]
rs3791700	1.00[YRI][hapmap]
rs3791702	0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs3791704	0.82[CEU][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs3791709	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs3791710	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs4673616	1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs4673617	0.86[EUR][1000 genomes]
rs55901919	0.86[EUR][1000 genomes]
rs62178762	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6435622	0.80[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.84[LWK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73985439	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7591494	0.80[CHB][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212303000-212305000	Weak transcription	Brain Substantia Nigra	brain
2	chr2:212303000-212313400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:212303600-212304600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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