Variant report

Variant	rs16825008
Chromosome Location	chr2:212304841-212304842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212300211..212302596-chr2:212303627..212305384,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10932374	0.86[MEX][hapmap]
rs16825005	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16846013	0.93[MEX][hapmap]
rs16846100	0.93[MEX][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs16846127	0.86[MEX][hapmap]
rs16846133	0.82[CHD][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap]
rs16846136	0.83[LWK][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs16846140	0.82[CHD][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1836717	0.82[CHD][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs2033647	0.87[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3791691	0.86[MEX][hapmap]
rs3791696	0.93[MEX][hapmap];1.00[YRI][hapmap]
rs3791700	1.00[YRI][hapmap]
rs3791704	0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3791707	0.86[MEX][hapmap]
rs3791708	0.86[MEX][hapmap]
rs3791709	1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs3791710	0.82[JPT][hapmap]
rs4673613	0.87[MEX][hapmap]
rs4673616	1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs55901919	0.81[AMR][1000 genomes]
rs62178762	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6435622	0.87[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73985439	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7591494	1.00[YRI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212303000-212305000	Weak transcription	Brain Substantia Nigra	brain
2	chr2:212303000-212313400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:212304600-212317800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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