Variant report

Variant	rs3791696
Chromosome Location	chr2:212270839-212270840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212269284..212272087-chr2:212272450..212275433,2	MCF-7	breast:
2	chr2:212263390..212265128-chr2:212269573..212272489,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10932374	0.81[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs12467225	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs12471583	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs13431425	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1595066	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs16825005	1.00[YRI][hapmap]
rs16825008	0.93[MEX][hapmap];1.00[YRI][hapmap]
rs16846013	0.84[CHB][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs16846048	0.86[EUR][1000 genomes]
rs16846049	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16846100	0.87[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16846127	0.93[MEX][hapmap]
rs16846133	0.93[MEX][hapmap]
rs16846136	1.00[YRI][hapmap]
rs16846140	0.92[MEX][hapmap]
rs1836717	0.93[MEX][hapmap];1.00[YRI][hapmap]
rs2033647	0.93[MEX][hapmap]
rs3791682	0.82[MEX][hapmap]
rs3791687	0.81[ASN][1000 genomes]
rs3791691	0.95[CHB][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.88[ASN][1000 genomes]
rs3791697	0.87[ASN][1000 genomes]
rs3791699	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3791700	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3791701	0.88[ASN][1000 genomes]
rs3791704	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3791707	0.82[CHD][hapmap];0.93[MEX][hapmap]
rs3791708	0.82[CHD][hapmap];0.93[MEX][hapmap]
rs3791709	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs4673613	0.95[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.89[ASN][1000 genomes]
rs4673614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4673616	1.00[YRI][hapmap]
rs6435622	1.00[YRI][hapmap]
rs6749560	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs7591494	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv460065	chr2:212244520-212276710	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv584315	chr2:212244520-212276710	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212258600-212272200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212265200-212272800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:212266200-212272600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:212269200-212272600	Weak transcription	Aorta	Aorta
5	chr2:212269600-212272400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:212270000-212272400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:212270000-212272400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:212270600-212271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:212270800-212272200	Weak transcription	NH-A	brain

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