Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10932374	0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs12467225	0.90[JPT][hapmap]
rs12471583	0.91[JPT][hapmap];1.00[YRI][hapmap]
rs13431425	0.86[JPT][hapmap]
rs1579599	0.88[ASN][1000 genomes]
rs1595064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1595066	0.91[JPT][hapmap]
rs16845990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16846013	0.90[JPT][hapmap];0.84[YRI][hapmap]
rs16846049	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1836737	0.83[ASN][1000 genomes]
rs1971803	0.88[ASN][1000 genomes]
rs2371263	0.86[ASN][1000 genomes]
rs3791682	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3791687	0.83[EUR][1000 genomes]
rs3791691	0.85[JPT][hapmap]
rs3791696	0.86[EUR][1000 genomes]
rs3791700	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs4673613	0.85[JPT][hapmap]
rs60650708	0.83[ASN][1000 genomes]
rs62180104	0.81[ASN][1000 genomes]
rs6749560	0.90[JPT][hapmap]
rs7559343	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv460065	chr2:212244520-212276710	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv584315	chr2:212244520-212276710	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212258600-212272200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212261200-212262400	Enhancers	Brain Hippocampus Middle	brain
3	chr2:212261200-212262600	Enhancers	Brain Anterior Caudate	brain
4	chr2:212261200-212263000	Enhancers	Brain Substantia Nigra	brain
5	chr2:212261600-212262800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr2:212261800-212268600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:212262000-212262400	Enhancers	Brain Inferior Temporal Lobe	brain

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