Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212241135..212244120-chr2:212267640..212269508,2	MCF-7	breast:
2	chr2:212242066..212245151-chr2:212271494..212274404,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10932374	0.87[JPT][hapmap]
rs12467225	0.86[JPT][hapmap]
rs12471583	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs13431425	0.82[JPT][hapmap]
rs1579599	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1579600	0.81[EUR][1000 genomes]
rs1595066	0.87[CEU][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes]
rs16845990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846013	0.86[JPT][hapmap]
rs16846048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1836734	0.88[EUR][1000 genomes]
rs1836735	0.89[EUR][1000 genomes]
rs1836737	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1971801	0.94[EUR][1000 genomes]
rs1971802	0.88[EUR][1000 genomes]
rs1971803	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2371262	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2371263	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2887992	0.88[EUR][1000 genomes]
rs3791682	0.85[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs3791691	0.82[JPT][hapmap]
rs4673613	0.82[JPT][hapmap]
rs60650708	0.89[ASN][1000 genomes]
rs62180104	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62180134	0.90[EUR][1000 genomes]
rs62180135	0.90[EUR][1000 genomes]
rs6749560	0.87[JPT][hapmap]
rs7559343	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7603166	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212237600-212248200	Weak transcription	Aorta	Aorta
2	chr2:212238800-212244400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:212241600-212244400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:212242000-212246600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: