Variant report

Variant	rs2371262
Chromosome Location	chr2:212235017-212235018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1579599	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1579600	0.83[EUR][1000 genomes]
rs1595064	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1595066	0.93[EUR][1000 genomes]
rs16845990	0.88[CEU][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1836734	0.85[EUR][1000 genomes]
rs1836735	0.86[EUR][1000 genomes]
rs1836737	0.94[EUR][1000 genomes]
rs1971801	0.94[EUR][1000 genomes]
rs1971802	0.90[EUR][1000 genomes]
rs1971803	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2371263	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2887992	0.86[EUR][1000 genomes]
rs62180104	0.87[EUR][1000 genomes]
rs62180134	0.87[EUR][1000 genomes]
rs62180135	0.87[EUR][1000 genomes]
rs7559343	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7603166	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212234400-212236400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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