Variant report

Variant	rs1595066
Chromosome Location	chr2:212241725-212241726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212241135..212244120-chr2:212267640..212269508,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10932374	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12467225	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12471583	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12472934	0.82[AMR][1000 genomes]
rs13431425	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1579599	0.87[EUR][1000 genomes]
rs1595064	0.87[CEU][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes]
rs1595067	0.91[ASN][1000 genomes]
rs16845990	0.88[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs16846013	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16846048	0.91[JPT][hapmap]
rs16846049	0.81[ASN][1000 genomes]
rs1836734	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1836735	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1836737	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1971801	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1971802	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1971803	0.87[EUR][1000 genomes]
rs2371262	0.93[EUR][1000 genomes]
rs2371263	0.85[EUR][1000 genomes]
rs2887992	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3791682	0.88[YRI][hapmap]
rs3791687	0.91[ASN][1000 genomes]
rs3791691	0.89[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs3791696	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs3791700	0.80[CHB][hapmap]
rs3791707	0.81[MEX][hapmap]
rs4673613	0.90[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs4673614	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs60598560	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62180104	0.82[EUR][1000 genomes]
rs62180134	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62180135	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6749560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[ASN][1000 genomes]
rs7559343	0.91[EUR][1000 genomes]
rs7603166	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212237600-212248200	Weak transcription	Aorta	Aorta
2	chr2:212238800-212244400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:212241600-212244400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links