Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212253910..212256658-chr2:212257383..212259905,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10932374	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12467225	0.90[ASN][1000 genomes]
rs12471583	0.89[ASN][1000 genomes]
rs13431425	0.86[ASN][1000 genomes]
rs1595066	0.91[ASN][1000 genomes]
rs1595067	0.82[ASN][1000 genomes]
rs16846013	0.93[ASN][1000 genomes]
rs16846048	0.83[EUR][1000 genomes]
rs16846049	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1836734	0.86[ASN][1000 genomes]
rs1836735	0.88[ASN][1000 genomes]
rs1971801	0.90[ASN][1000 genomes]
rs1971802	0.89[ASN][1000 genomes]
rs2887992	0.90[ASN][1000 genomes]
rs3791691	0.90[ASN][1000 genomes]
rs3791696	0.81[ASN][1000 genomes]
rs3791697	0.87[ASN][1000 genomes]
rs3791699	0.88[ASN][1000 genomes]
rs3791700	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3791701	0.81[ASN][1000 genomes]
rs4673613	0.86[ASN][1000 genomes]
rs4673614	0.85[ASN][1000 genomes]
rs60598560	0.81[ASN][1000 genomes]
rs62180134	0.89[ASN][1000 genomes]
rs62180135	0.89[ASN][1000 genomes]
rs6749560	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv460065	chr2:212244520-212276710	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv584315	chr2:212244520-212276710	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212256000-212259600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212256200-212261200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:212256400-212258800	Weak transcription	Brain Substantia Nigra	brain
4	chr2:212256400-212259600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:212256400-212261200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:212256400-212261400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:212258200-212259600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:212258400-212259000	Enhancers	Brain Anterior Caudate	brain
9	chr2:212258600-212258800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr2:212258600-212259000	Enhancers	Brain Hippocampus Middle	brain
11	chr2:212258600-212272200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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