Variant report

Variant	rs62180135
Chromosome Location	chr2:212237829-212237830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212229635..212231733-chr2:212236434..212239160,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10932374	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12467225	0.97[ASN][1000 genomes]
rs12471583	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12472934	0.80[AMR][1000 genomes]
rs1579599	0.96[EUR][1000 genomes]
rs1595064	0.90[EUR][1000 genomes]
rs1595066	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1595067	0.93[ASN][1000 genomes]
rs16845990	0.90[EUR][1000 genomes]
rs16846013	0.94[ASN][1000 genomes]
rs16846049	0.81[ASN][1000 genomes]
rs1836734	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1836735	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1836737	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1971801	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1971802	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1971803	0.96[EUR][1000 genomes]
rs2371262	0.87[EUR][1000 genomes]
rs2371263	0.94[EUR][1000 genomes]
rs2887992	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3791687	0.89[ASN][1000 genomes]
rs3791691	0.82[ASN][1000 genomes]
rs60598560	0.92[ASN][1000 genomes]
rs62180104	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62180134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6712652	0.83[AMR][1000 genomes]
rs6749560	0.96[ASN][1000 genomes]
rs7559343	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212237600-212248200	Weak transcription	Aorta	Aorta

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