Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212229635..212231733-chr2:212236434..212239160,2	MCF-7	breast:
2	chr2:212235198..212236754-chr2:212238165..212239731,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1579599	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1579600	0.83[ASN][1000 genomes]
rs1595064	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1595066	0.87[EUR][1000 genomes]
rs16845990	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16846048	0.88[ASN][1000 genomes]
rs1836734	0.94[EUR][1000 genomes]
rs1836735	0.95[EUR][1000 genomes]
rs1836737	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1971801	0.88[EUR][1000 genomes]
rs1971802	0.98[EUR][1000 genomes]
rs2371262	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2371263	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2887992	0.94[EUR][1000 genomes]
rs3791682	0.92[ASN][1000 genomes]
rs60650708	0.94[ASN][1000 genomes]
rs62180104	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62180134	0.96[EUR][1000 genomes]
rs62180135	0.96[EUR][1000 genomes]
rs7559343	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7603166	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212237600-212248200	Weak transcription	Aorta	Aorta
2	chr2:212238000-212238800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: