Variant report

Variant	rs1971802
Chromosome Location	chr2:212238541-212238542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212229635..212231733-chr2:212236434..212239160,2	MCF-7	breast:
2	chr2:212235198..212236754-chr2:212238165..212239731,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10932374	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12467225	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12471583	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13431425	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1579599	0.98[EUR][1000 genomes]
rs1579600	0.81[AMR][1000 genomes]
rs1595064	0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs1595066	0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1595067	0.92[ASN][1000 genomes]
rs16845990	0.89[GIH][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs16846013	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16846048	0.91[JPT][hapmap];0.84[YRI][hapmap]
rs1836734	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1836735	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1836737	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1971801	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1971803	0.98[EUR][1000 genomes]
rs2371262	0.90[EUR][1000 genomes]
rs2371263	0.97[EUR][1000 genomes]
rs2887992	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3791687	0.89[ASN][1000 genomes]
rs3791691	0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3791696	0.86[JPT][hapmap]
rs3791700	0.85[CHB][hapmap]
rs4673613	0.85[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs4673614	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs60598560	0.91[ASN][1000 genomes]
rs62180104	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62180134	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62180135	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6712652	0.82[AMR][1000 genomes]
rs6749560	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7559343	0.83[EUR][1000 genomes]
rs7603166	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212237600-212248200	Weak transcription	Aorta	Aorta
2	chr2:212238000-212238800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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